View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16802_low_4 (Length: 362)
Name: NF16802_low_4
Description: NF16802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16802_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 31040497 - 31040150
Alignment:
| Q |
1 |
tattttaataaaaatgagttagcctcaatattaaaataaaataaagaactaatatgctattacatgggccactcaacaaaatattagagaatcaggccca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31040497 |
tattttaataaaaatgagttagcctcaatattaaaataaaataaagaactaatatgctattacatgggccactcaacaaaatattagagaatcaggccca |
31040398 |
T |
|
| Q |
101 |
gtaacaatcatcaccttatttttgtgagtcggtttgtaaaatgatttaagctcaatataaaacctatattttattttaatttcccatttagccacaggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31040397 |
gtaacaatcatcaccttatttttgtgagtcggtttgtaaaatgatttaagctcaatataaaacctatattttattttaatttccaatttagccacaggaa |
31040298 |
T |
|
| Q |
201 |
tgaatacttgctcgtttagaggcttaattttctccccctgtcactactgttatattctgtttagtgattattatttgttcaaaaaatatgcaggggaaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31040297 |
tgaatacttgctcgtttagaggcttaattttctccccccgtcactactgttatattctgtttagtgattattatttgttcaaaaaatatgcaggggaaag |
31040198 |
T |
|
| Q |
301 |
aagttaagctgtaactgaaattgatattcaatttcaatggtggggttc |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31040197 |
aagttaagctgtaactgaaattgatattcaatttcaatggtggggttc |
31040150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University