View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_high_1 (Length: 651)
Name: NF16803_high_1
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 41 - 634
Target Start/End: Original strand, 12272630 - 12273212
Alignment:
| Q |
41 |
actaccataaaaggaagaaagaaactttagaaactcaaatatttagtagataattccaagacatgaatgtacctccaaattatgtgttgtgctgccccat |
140 |
Q |
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| T |
12272630 |
actaccataaaaggaagaaagaaactttagaaactcaaatatttagtagataattccaagacatgaatgtacctccaaattatgtgttgtgctgccccat |
12272729 |
T |
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| Q |
141 |
atgaaccccaccaaagtgcagatgcaggggactgcgatacagccgttaatccaaaacctctatacaagccacgaacaccctcagcatgcactactcttcg |
240 |
Q |
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| T |
12272730 |
atgaaccccaccaaagtgcagatgcaggggactgcgatacagccgttaatccaaaacctctatacaagccacgaacaccctcagcatgcactactcttcg |
12272829 |
T |
|
| Q |
241 |
gataacatcaaatggtcctttacaatatgtagttccaggaagaccttgaaccattaacctttggcaaatctgagaaaacattaaccaaaattattcacaa |
340 |
Q |
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| T |
12272830 |
gataacatcaaatggtcctttacaatatgtagttccaggaagaccttgaaccattagcctttggcaaatctgagaaaacattaaccaaaattattcacaa |
12272929 |
T |
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| Q |
341 |
tgatcaatcaagactaaaggacctatgcaaaaacaataatttaagctaccataattgcttaaatgtacatacataattgtaatatttgtccaccaatgga |
440 |
Q |
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| T |
12272930 |
tgatcaatcaagactaaaggacctatgcaaaaaccataatttaagctaccataattgcttaaatatacatacataattgtaatatttgtccaccaatgga |
12273029 |
T |
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| Q |
441 |
aaagcaaattgacagtatctaaaaatattacttaccacatccaaaggcacaaagtaaacacaagaaaccaagtttgaaaccatgccagcaacagcatttg |
540 |
Q |
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| T |
12273030 |
aaagc-----------atctaaaaatattacttaccacatccaaaggcacaaagtaaacacaagaaaccaagtttgaaaccatgccagcaacagcatttg |
12273118 |
T |
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| Q |
541 |
caaggccaatacgtgatgcttctggaatatcactaccttgagtgtgtttcaacataaagtcctttgacatctcaagagatgtaagggctaaaac |
634 |
Q |
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| T |
12273119 |
caaggccaatacgtgatgcttctggaatatcgctaccttgagtgtgtttcaacataaagtcctttgacatctcaagagatgtaagggctaaaac |
12273212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 12268889 - 12268848
Alignment:
| Q |
9 |
acatcatcacaacgcattgttttacttgactaactaccataa |
50 |
Q |
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| T |
12268889 |
acatcatcacaacgcattgttttacttgactaactaccataa |
12268848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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