View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_high_17 (Length: 426)
Name: NF16803_high_17
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 117 - 323
Target Start/End: Original strand, 40815134 - 40815340
Alignment:
| Q |
117 |
gttgaaatctgaatcatctgatcttgataacatggccttgaaccctcagactacatagaaacctactgtacataggtacaatggataccgcgaagattta |
216 |
Q |
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| T |
40815134 |
gttgaaatctgaatcatctgatcttaataacatgaccttgaaccctcggactacatagaaacctattgtacataggtacaatggataccgccaagattta |
40815233 |
T |
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| Q |
217 |
ctttgttattatacctatatatattttctatgggagcctttataaaattctagtttaactaaggttttgggttcaaattcaactttgggcatgccgcaac |
316 |
Q |
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| T |
40815234 |
ctttgttattatacctatatatattttctatgggagcctttataaaattctagtttaactaaggttttgggttcaaatttaactttgggcatcccgcaac |
40815333 |
T |
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| Q |
317 |
gttaaaa |
323 |
Q |
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||||||| |
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| T |
40815334 |
gttaaaa |
40815340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 319 - 409
Target Start/End: Original strand, 40815891 - 40815981
Alignment:
| Q |
319 |
taaaatttttaggaagattctatcgtctgtttgggtctcaaaaagcataaggaattagtctctgcaattgcacgtggaggatatccgattt |
409 |
Q |
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| T |
40815891 |
taaaacttttaggaagagtttgtcgtcattttgggtctcaaaaagcataaggaattaatctctgcaattgtacgtggaggatatccgattt |
40815981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 40815036 - 40815087
Alignment:
| Q |
15 |
aaaggggtggtcgatagggaattggatcagattcagttaggattgtagatat |
66 |
Q |
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| T |
40815036 |
aaaggggtggtcgatagggaattggatcagattcagttaggattgtagatat |
40815087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 325
Target Start/End: Original strand, 33096782 - 33096843
Alignment:
| Q |
264 |
ttctagtttaactaaggttttgggttcaaattcaactttgggcatgccgcaacgttaaaatt |
325 |
Q |
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| T |
33096782 |
ttctaatttaactaaggttctgagttcgaattcaactttgggtgtgcagcaacgttaaaatt |
33096843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 331
Target Start/End: Complemental strand, 2804609 - 2804542
Alignment:
| Q |
264 |
ttctagtttaactaaggttttgggttcaaattcaactttgggcatgccgcaacgttaaaatttttagg |
331 |
Q |
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| T |
2804609 |
ttctagcttaaccaaggttttgggttcgaatccaaccttgagcatgcagcagcgttaaaacttttagg |
2804542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 34210112 - 34210071
Alignment:
| Q |
284 |
tgggttcaaattcaactttgggcatgccgcaacgttaaaatt |
325 |
Q |
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| T |
34210112 |
tgggttcaaattcaactttgtgcatgcagcagcgttaaaatt |
34210071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 32534097 - 32534156
Alignment:
| Q |
264 |
ttctagtttaactaaggttttgggttcaaattcaactttgggcatgccgcaacgttaaaa |
323 |
Q |
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|||||| ||||| |||||||||| |||||||||| ||||| |||||| ||||||||||| |
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| T |
32534097 |
ttctagcttaaccaaggttttggattcaaattcagctttgagcatgcaacaacgttaaaa |
32534156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 10841038 - 10841098
Alignment:
| Q |
271 |
ttaactaaggttttgggttcaaattcaactttgggcatgccgcaacgttaaaatttttagg |
331 |
Q |
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| T |
10841038 |
ttaaccaagattttgggttcaaattcagccttgggcatgtaacaacgttaaaattcttagg |
10841098 |
T |
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