View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16803_high_26 (Length: 345)

Name: NF16803_high_26
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16803_high_26
NF16803_high_26
[»] chr4 (8 HSPs)
chr4 (10-333)||(11415694-11416020)
chr4 (5-63)||(37005893-37005951)
chr4 (4-53)||(34657915-34657964)
chr4 (1-66)||(25219677-25219742)
chr4 (3-63)||(34512086-34512146)
chr4 (10-60)||(19298804-19298854)
chr4 (13-66)||(8667087-8667140)
chr4 (10-66)||(18234275-18234331)
[»] chr3 (10 HSPs)
chr3 (156-330)||(32252733-32252907)
chr3 (11-69)||(26953937-26953995)
chr3 (1-66)||(1051306-1051371)
chr3 (10-63)||(25760053-25760106)
chr3 (11-66)||(18517712-18517767)
chr3 (4-52)||(10623238-10623286)
chr3 (10-66)||(19826401-19826457)
chr3 (10-57)||(19256160-19256207)
chr3 (10-65)||(26430290-26430345)
chr3 (10-63)||(19185109-19185162)
[»] chr1 (17 HSPs)
chr1 (142-333)||(36372974-36373166)
chr1 (1-70)||(34528904-34528973)
chr1 (4-55)||(19054385-19054436)
chr1 (14-70)||(10032073-10032129)
chr1 (10-70)||(26505915-26505975)
chr1 (12-62)||(16816227-16816277)
chr1 (1-66)||(10423790-10423855)
chr1 (13-66)||(19088910-19088963)
chr1 (10-63)||(10433230-10433283)
chr1 (21-66)||(14986127-14986172)
chr1 (11-64)||(27035843-27035896)
chr1 (14-70)||(41574284-41574340)
chr1 (4-67)||(43021723-43021786)
chr1 (2-36)||(3833445-3833479)
chr1 (5-63)||(18332693-18332751)
chr1 (10-63)||(13309371-13309424)
chr1 (10-66)||(2583068-2583124)
[»] chr7 (9 HSPs)
chr7 (174-330)||(8846858-8847014)
chr7 (1-69)||(1633328-1633396)
chr7 (11-61)||(28780215-28780265)
chr7 (11-61)||(2040072-2040122)
chr7 (1-49)||(12163419-12163467)
chr7 (5-63)||(980947-981005)
chr7 (14-44)||(1537969-1537999)
chr7 (10-66)||(14073822-14073877)
chr7 (10-66)||(14383850-14383905)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-67)||(1482-1548)
[»] chr8 (16 HSPs)
chr8 (1-66)||(26657691-26657756)
chr8 (1-66)||(16290880-16290945)
chr8 (10-62)||(18036809-18036861)
chr8 (2-62)||(24184744-24184804)
chr8 (2-62)||(24317424-24317484)
chr8 (13-66)||(23595413-23595466)
chr8 (13-66)||(23604335-23604388)
chr8 (10-66)||(21593216-21593272)
chr8 (2-37)||(19742067-19742102)
chr8 (1-66)||(10568289-10568354)
chr8 (1-66)||(29840885-29840950)
chr8 (1-66)||(45268824-45268889)
chr8 (1-61)||(44371-44431)
chr8 (14-66)||(6001459-6001511)
chr8 (10-66)||(16890007-16890063)
chr8 (1-61)||(41600748-41600808)
[»] scaffold0068 (1 HSPs)
scaffold0068 (2-65)||(2319-2382)
[»] chr5 (9 HSPs)
chr5 (2-65)||(21711528-21711591)
chr5 (1-62)||(2259390-2259451)
chr5 (2-62)||(15614762-15614822)
chr5 (1-55)||(24765501-24765555)
chr5 (10-62)||(4120552-4120604)
chr5 (14-70)||(24122975-24123031)
chr5 (11-66)||(5781069-5781124)
chr5 (20-63)||(25538844-25538887)
chr5 (10-66)||(19068683-19068739)
[»] chr6 (23 HSPs)
chr6 (1-62)||(13575025-13575086)
chr6 (1-62)||(13577564-13577625)
chr6 (1-66)||(20898986-20899051)
chr6 (5-55)||(24617733-24617783)
chr6 (9-62)||(13565945-13565998)
chr6 (2-62)||(14641461-14641521)
chr6 (4-55)||(8483632-8483683)
chr6 (1-55)||(15141904-15141958)
chr6 (10-63)||(11319502-11319555)
chr6 (1-62)||(13570489-13570550)
chr6 (10-66)||(12435987-12436043)
chr6 (10-55)||(15050036-15050081)
chr6 (10-63)||(24205493-24205546)
chr6 (1-63)||(9351116-9351178)
chr6 (10-44)||(22705348-22705382)
chr6 (10-64)||(34338085-34338139)
chr6 (10-63)||(9344511-9344564)
chr6 (1-66)||(14372175-14372240)
chr6 (13-66)||(26592511-26592564)
chr6 (14-63)||(30884437-30884486)
chr6 (10-66)||(18306717-18306773)
chr6 (13-61)||(24373551-24373599)
chr6 (18-66)||(32569871-32569919)
[»] scaffold0437 (2 HSPs)
scaffold0437 (2-62)||(11439-11499)
scaffold0437 (11-66)||(14319-14374)
[»] chr2 (14 HSPs)
chr2 (1-56)||(40926460-40926515)
chr2 (13-66)||(12102845-12102898)
chr2 (11-56)||(13619093-13619138)
chr2 (10-63)||(28522885-28522938)
chr2 (10-66)||(29216636-29216692)
chr2 (10-66)||(29329935-29329991)
chr2 (11-44)||(6083769-6083802)
chr2 (1-42)||(17151319-17151360)
chr2 (1-66)||(36802254-36802319)
chr2 (10-63)||(38376856-38376909)
chr2 (10-62)||(17377499-17377551)
chr2 (10-66)||(20477458-20477514)
chr2 (2-34)||(24933718-24933750)
chr2 (1-37)||(28948895-28948931)
[»] scaffold0166 (1 HSPs)
scaffold0166 (1-55)||(7998-8052)
[»] scaffold0176 (1 HSPs)
scaffold0176 (1-70)||(26476-26544)
[»] scaffold0292 (1 HSPs)
scaffold0292 (10-66)||(21253-21309)
[»] scaffold0114 (1 HSPs)
scaffold0114 (11-55)||(2976-3020)
[»] scaffold0006 (1 HSPs)
scaffold0006 (13-65)||(36662-36714)
[»] scaffold0196 (1 HSPs)
scaffold0196 (10-44)||(797-831)
[»] scaffold0607 (1 HSPs)
scaffold0607 (1-66)||(296-361)
[»] scaffold0257 (1 HSPs)
scaffold0257 (14-63)||(16233-16282)
[»] scaffold0356 (1 HSPs)
scaffold0356 (1-33)||(13749-13781)
[»] scaffold0123 (1 HSPs)
scaffold0123 (11-39)||(29985-30013)
[»] scaffold0012 (1 HSPs)
scaffold0012 (10-42)||(52742-52774)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 333
Target Start/End: Complemental strand, 11416020 - 11415694
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgcctagnnnnnnnncct---agattatagcaataaagagtagtat 106  Q
    |||||||| ||||||||||||||||||||||| || |||  ||||||||||||||||||||          |   |||||||||||||||||||  ||||    
T  11416020 gtgccaacttagttgggatgtcggtgtttccttttgatgtttgtcctctctccttgcctagcaaaaaaaatttttagattatagcaataaagagcggtat 11415921  T
Q  107 ttgtgatgaatcctaatttttgggattaacttcataactatcagttttcttaacaatctttcacatgtattttgttaaagtctttggaggatgaaaattt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11415920 ttgtgatgaatcctaatttttgggattaacttcataactatcagttttcttaacaatctttcacatgtattttgttaaagtctttggaggatgaaaattt 11415821  T
Q  207 gacatattccaattacattaacctctttattcagagtttttaactttgtaccaagtgaaccttgatcatcatagaaatttacatgaaattgacatgaata 306  Q
    || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11415820 gatatattccaattacattgacctctttattcagagtttttaactttgtaccaagtgaaccttgatcatcgtagaaatttacatgaaattgacatgaata 11415721  T
Q  307 ttggtcagattcgttaggttgtctgtg 333  Q
    ||| |||||||||||||||||||||||    
T  11415720 ttgatcagattcgttaggttgtctgtg 11415694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 37005951 - 37005893
Alignment:
Q  5 ccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcct 63  Q
    |||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||    
T  37005951 ccggggtgccaacctaattgggatgtcggtgcttcctcttgatgcatgtcctctctcct 37005893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 34657964 - 34657915
Alignment:
Q  4 cccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgt 53  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  34657964 cccggggtgccaacctagttgggatgtcggtgtttcctcttgatgcatgt 34657915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 25219677 - 25219742
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||  |||||||||||||||| |||||||||||||||| | ||| |||||||  ||||||||    
T  25219677 tttcccgaggtgccaacctagttggaatgtcggtgtttcctcctgatgtatgtccttactccttgc 25219742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 34512086 - 34512146
Alignment:
Q  3 tcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcct 63  Q
    |||||| ||||||||||||||||||||||| || | |||||| |||| ||||| |||||||    
T  34512086 tcccggggtgccaacctagttgggatgtcgatgatgcctcttgatgcctgtccactctcct 34512146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 19298854 - 19298804
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctct 60  Q
    ||||||||||||||| |||||| |||||||||||| ||| |||| ||||||    
T  19298854 gtgccaacctagttgagatgtcagtgtttcctcttgatgtatgttctctct 19298804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 8667140 - 8667087
Alignment:
Q  13 ccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    ||||||||||| |||||||| |||| |||||| |||| ||||| ||||||||||    
T  8667140 ccaacctagttaggatgtcgatgttgcctcttgatgcctgtccactctccttgc 8667087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 18234275 - 18234331
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||||||||||| |||||| || |  ||| |||||| ||||||||||||||||    
T  18234275 gtgccaacctagttggaatgtcgatgatgactcctcatgcctgtcctctctccttgc 18234331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 156 - 330
Target Start/End: Original strand, 32252733 - 32252907
Alignment:
Q  156 ttaacaatctttcacatgtattttgttaaagtctttggaggatgaaaatttgacatattccaattacattaacctctttattcagagtttttaactttgt 255  Q
    ||||||| | |||||| ||||| |||| ||| |||||||||||||||||||||   ||||||||| |||||||||||||||| |||||||||| || |||    
T  32252733 ttaacaagccttcacaagtattatgttgaagcctttggaggatgaaaatttgatccattccaattgcattaacctctttattaagagtttttacctctgt 32252832  T
Q  256 accaagtgaaccttgatcatcatagaaatttacatgaaattgacatgaatattggtcagattcgttaggttgtct 330  Q
    |||||||||||||||||| ||||| || ||||||| ||||||||||||| |||| || |||| || |||||||||    
T  32252833 accaagtgaaccttgatcgtcataaaagtttacataaaattgacatgaacattgatcggatttgtgaggttgtct 32252907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 26953995 - 26953937
Alignment:
Q  11 tgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgccta 69  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  26953995 tgccaacctagttgggatgtcggtgtttcctcttgatgcatgtcgtctctccttgccta 26953937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 1051371 - 1051306
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||  |||||||||||||||||||||||||||| |||||| |||  ||||||||||||||||    
T  1051371 tttcccgaggtgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctccttgc 1051306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 25760053 - 25760106
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcct 63  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  25760053 gtgccaacctagttgggatgtcggtgttgcctcttgatgcttgtcctctctcct 25760106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 18517712 - 18517767
Alignment:
Q  11 tgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||||||||||||||||| |||| |||||| |||||||||| ||||||||||    
T  18517712 tgccaacctagttgggatgtcgatgttgcctcttgatgcatgtccactctccttgc 18517767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 10623286 - 10623238
Alignment:
Q  4 cccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatg 52  Q
    ||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  10623286 cccggggtgccaacctagttaggatgtcggtgtttcctcttgatgcatg 10623238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 19826457 - 19826401
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    ||||||||||||||||||||||| |||| |||||| |||| |||| || ||||||||    
T  19826457 gtgccaacctagttgggatgtcgatgttgcctcttaatgcttgtcttccctccttgc 19826401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 19256160 - 19256207
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctc 57  Q
    |||||||||||||| |||||||| ||||||||||| || |||||||||    
T  19256160 gtgccaacctagttaggatgtcgttgtttcctcttgatacatgtcctc 19256207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 26430290 - 26430345
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttg 65  Q
    |||||||||||||| |||||||| || | |||||| ||| ||||||||||||||||    
T  26430290 gtgccaacctagttaggatgtcgatgatgcctcttgatgtatgtcctctctccttg 26430345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 19185109 - 19185162
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcct 63  Q
    ||||||||||||||||||||||| || |||  ||| |||| |||||||||||||    
T  19185109 gtgccaacctagttgggatgtcgttgcttctccttgatgcctgtcctctctcct 19185162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 142 - 333
Target Start/End: Complemental strand, 36373166 - 36372974
Alignment:
Q  142 aactatcagttt-tcttaacaatctttcacatgtattttgttaaagtctttggaggatgaaaatttgacatattccaattacattaacctctttattcag 240  Q
    |||||||| ||| ||||||| ||| |||||| |||||| ||| ||||||||||||||||  ||||||    || ||||| ||| |||||||||| |||||    
T  36373166 aactatcattttctcttaacgatccttcacaagtatttcgttgaagtctttggaggatgctaatttgcttaataccaatcacactaacctctttcttcag 36373067  T
Q  241 agtttttaactttgtaccaagtgaaccttgatcatcatagaaatttacatgaaattgacatgaatattggtcagattcgttaggttgtctgtg 333  Q
    |||| ||| || |||||||| |||| ||||||||| ||| |||||||| | |||  |||||||| |||||||||||| || ||||| ||||||    
T  36373066 agttcttatctctgtaccaactgaatcttgatcattataaaaatttactttaaaccgacatgaacattggtcagatttgtgaggttttctgtg 36372974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 34528973 - 34528904
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgcctag 70  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| ||||  || ||||||||||||||||    
T  34528973 tttcccggggtgccaacctagttgggatgtcgctgtttcctcttgatgcccgttctctctccttgcctag 34528904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 19054436 - 19054385
Alignment:
Q  4 cccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcc 55  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  19054436 cccggggtgccaacctagttgggatgtcggtgtttcctcttgatgcatgtcc 19054385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 10032129 - 10032073
Alignment:
Q  14 caacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgcctag 70  Q
    ||||||||||||||||||||||||||||||| |||| |||||  |||||||||||||    
T  10032129 caacctagttgggatgtcggtgtttcctcttgatgcctgtcccttctccttgcctag 10032073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 26505915 - 26505975
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgcctag 70  Q
    |||||||||||| |||  |||| |||||||||||| |||||||||||||||||||||||||    
T  26505915 gtgccaacctagctggtttgtcagtgtttcctcttgatgcatgtcctctctccttgcctag 26505975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 16816277 - 16816227
Alignment:
Q  12 gccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcc 62  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| ||||||    
T  16816277 gccaacctagttgggatgttggtgtttcctcttgatgcatgtccactctcc 16816227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10423855 - 10423790
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||| ||| ||||||||||||||||||||||| |||| |||||| |||| ||||| ||||||||||    
T  10423855 tttctcggggtgccaacctagttgggatgtcgatgttgcctcttgatgcttgtccactctccttgc 10423790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 19088910 - 19088963
Alignment:
Q  13 ccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||| ||| |||||| |||||||||||| |||||||||||||||||||||    
T  19088910 ccaacctaattgagatgtcagtgtttcctcttgatgcatgtcctctctccttgc 19088963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 10433230 - 10433283
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcct 63  Q
    |||| ||||||||||||||||||||| |||||||| |||| |||||| ||||||    
T  10433230 gtgcaaacctagttgggatgtcggtgcttcctcttgatgcttgtcctttctcct 10433283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 14986127 - 14986172
Alignment:
Q  21 gttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||| ||||||||||||||||||| |||||||||||||||| ||||    
T  14986127 gttgtgatgtcggtgtttcctcttgatgcatgtcctctctcattgc 14986172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 27035896 - 27035843
Alignment:
Q  11 tgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcctt 64  Q
    |||||||||||||||||||||| || | |||||| |||| ||||||||||||||    
T  27035896 tgccaacctagttgggatgtcgatgatgcctcttgatgcttgtcctctctcctt 27035843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 41574340 - 41574284
Alignment:
Q  14 caacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgcctag 70  Q
    ||||||||||||||||| |||||||||| || |||  |||||| |||||||||||||    
T  41574340 caacctagttgggatgttggtgtttccttttgatgtctgtcctttctccttgcctag 41574284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 43021786 - 43021723
Alignment:
Q  4 cccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgcc 67  Q
    ||||| |||||||||||  |||  ||||||||||| ||||| |||||||||||||||| |||||    
T  43021786 cccggggtgccaacctaagtggtttgtcggtgttttctcttgatgcatgtcctctctcattgcc 43021723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 3833479 - 3833445
Alignment:
Q  2 ttcccggtgtgccaacctagttgggatgtcggtgt 36  Q
    ||||||| |||||||||||||||||||||||||||    
T  3833479 ttcccggggtgccaacctagttgggatgtcggtgt 3833445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 18332751 - 18332693
Alignment:
Q  5 ccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcct 63  Q
    |||| ||||||||||||||||||||||| ||||| ||||| |||| |||| | ||||||    
T  18332751 ccggggtgccaacctagttgggatgtcgatgttttctcttaatgcttgtcttttctcct 18332693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 13309424 - 13309371
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcct 63  Q
    ||||||||||||||||||||||| || | |||||| |||| ||||| |||||||    
T  13309424 gtgccaacctagttgggatgtcgatgatgcctcttgatgcctgtccactctcct 13309371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 2583124 - 2583068
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||| |||||||||||||| || | |||||| |||  ||||||||||||||||    
T  2583124 gtgccaacttagttgggatgtcgatgatgcctcttgatgtctgtcctctctccttgc 2583068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 330
Target Start/End: Original strand, 8846858 - 8847014
Alignment:
Q  174 tattttgttaaagtctttggaggatgaaaatttgacatattccaattacattaacctctttattcagagtttttaactttgtaccaagtgaaccttgatc 273  Q
    |||| |||| ||| |||||||||||||||||| ||  ||||||| || ||| |||||| ||||| || |||||||  ||| |||||||||||||||||||    
T  8846858 tattatgttgaagcctttggaggatgaaaattcgatctattccagttgcataaacctccttattgagtgtttttatatttctaccaagtgaaccttgatc 8846957  T
Q  274 atcatagaaatttacatgaaattgacatgaatattggtcagattcgttaggttgtct 330  Q
     || ||||||||||||| ||| ||||| ||  |||| ||||| || | |||||||||    
T  8846958 ctcgtagaaatttacataaaactgacacgagcattgatcagactcatgaggttgtct 8847014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 1633328 - 1633396
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgccta 69  Q
    |||| ||| ||| ||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  1633328 tttctcggggtgtcaacctagttggattgtcggtgtttcctcttgatgcatgtcctctctccttgccta 1633396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 28780215 - 28780265
Alignment:
Q  11 tgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctc 61  Q
    |||||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  28780215 tgccaacctagttgggatgtcgatgttgcctcttgatgcatgtcctctctc 28780265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 2040122 - 2040072
Alignment:
Q  11 tgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctc 61  Q
    ||||||||||||||||||||||||| | |||||||||| ||||||| ||||    
T  2040122 tgccaacctagttgggatgtcggtgctacctcttcatgtatgtcctttctc 2040072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12163419 - 12163467
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgc 49  Q
    |||||||  |||||||||||||||||||||||||||| |||||| ||||    
T  12163419 tttcccgaggtgccaacctagttgggatgtcggtgttgcctcttgatgc 12163467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 980947 - 981005
Alignment:
Q  5 ccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcct 63  Q
    |||| |||||||||||||||||||||||| | | |||||| |||  |||||||||||||    
T  980947 ccggagtgccaacctagttgggatgtcggagctgcctcttgatgtttgtcctctctcct 981005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 1537999 - 1537969
Alignment:
Q  14 caacctagttgggatgtcggtgtttcctctt 44  Q
    |||||||||||||||||||||||||||||||    
T  1537999 caacctagttgggatgtcggtgtttcctctt 1537969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 14073822 - 14073877
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||||||||||| | |||| |||| |||||| |||| ||||||||||||||||    
T  14073822 gtgccaacctagttggtaagtcgatgttgcctcttgatgc-tgtcctctctccttgc 14073877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 14383850 - 14383905
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||||||||||| | |||| |||| |||||| |||| ||||||||||||||||    
T  14383850 gtgccaacctagttggtaagtcgatgttgcctcttgatgc-tgtcctctctccttgc 14383905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 1548 - 1482
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgcc 67  Q
    |||||||| |||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||    
T  1548 tttcccggggtgccaacctagttgggatgtcggtgttgcctcttgatgcttgtcctctctccttgcc 1482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 26657691 - 26657756
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||  |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  26657691 tttcccgaagtgccaacttagttgggatgtcggtgtttcctcttgatgcatgtcctctctccttgc 26657756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 16290880 - 16290945
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||| |||||||||||||||||||||||||||| |||||| |||  |||||| |||||||||    
T  16290880 tttcccggggtgccaacctagttgggatgtcggtgttgcctcttgatgtttgtcctttctccttgc 16290945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 18036861 - 18036809
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcc 62  Q
    |||||||| |||||||||||||||||||||||||| |||  ||||||||||||    
T  18036861 gtgccaacatagttgggatgtcggtgtttcctcttgatgtttgtcctctctcc 18036809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 24184804 - 24184744
Alignment:
Q  2 ttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcc 62  Q
    |||||||  ||||||||||||||||||||||||||| |||||| |||  ||||||||||||    
T  24184804 ttcccgggatgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctcc 24184744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 24317424 - 24317484
Alignment:
Q  2 ttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcc 62  Q
    ||||||| |||||||||||||||| |||| ||||||||||||| ||| |||| ||||||||    
T  24317424 ttcccggggtgccaacctagttggtatgttggtgtttcctcttgatgtatgttctctctcc 24317484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 23595413 - 23595466
Alignment:
Q  13 ccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||||||||||||||| || | |||||| |||| ||||||||||||||||    
T  23595413 ccaacctagttgggatgtcgatgatgcctcttgatgcgtgtcctctctccttgc 23595466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 23604335 - 23604388
Alignment:
Q  13 ccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||||||||||||||| || | |||||| |||| ||||||||||||||||    
T  23604335 ccaacctagttgggatgtcgatgatgcctcttgatgcgtgtcctctctccttgc 23604388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 21593216 - 21593272
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||||||||||| |||||| || | |||||| |||| ||||||||||||||||    
T  21593216 gtgccaacctagttggaatgtcgatgatgcctcttgatgcctgtcctctctccttgc 21593272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 19742067 - 19742102
Alignment:
Q  2 ttcccggtgtgccaacctagttgggatgtcggtgtt 37  Q
    ||||||| ||||||||||||||||||||||||||||    
T  19742067 ttcccggggtgccaacctagttgggatgtcggtgtt 19742102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10568354 - 10568289
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||| ||| |||||||||||||||| | |||| |||| |||||| |||  ||||||||||||||||    
T  10568354 tttctcggggtgccaacctagttggtaagtcgatgttgcctcttgatgtctgtcctctctccttgc 10568289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29840885 - 29840950
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||| ||| ||||||||||||||||||||||| ||||   |||| |||||||||| ||||| ||||    
T  29840885 tttctcggggtgccaacctagttgggatgtcgatgttgtttcttgatgcatgtccactctctttgc 29840950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 45268889 - 45268824
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||| ||| |||||||||| ||||| | |||| |||| |||||| |||| ||||||||||||||||    
T  45268889 tttctcggggtgccaacctggttggtaagtcgatgttgcctcttgatgcctgtcctctctccttgc 45268824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 44371 - 44431
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctc 61  Q
    |||||||| || |||||||| ||||||| |||||||||||| || ||||| |||| |||||    
T  44371 tttcccggggtaccaacctaattgggatttcggtgtttccttttgatgcaagtccactctc 44431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 6001459 - 6001511
Alignment:
Q  14 caacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||||||| |||||| |||| |||||| |||  ||||||||||||||||    
T  6001459 caacctagttggaatgtcgatgttgcctcttaatgtttgtcctctctccttgc 6001511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 16890007 - 16890063
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    ||||||||||||||||||||||| || |  ||| | |||| ||||||||||||||||    
T  16890007 gtgccaacctagttgggatgtcgatgatgactcctgatgcctgtcctctctccttgc 16890063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 41600748 - 41600808
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctc 61  Q
    |||| ||| ||||||| ||||||||||| ||| |||| |||||| |||||||||| |||||    
T  41600748 tttctcggggtgccaatctagttgggatatcgatgttgcctcttgatgcatgtccactctc 41600808  T

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Target: scaffold0068 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 2319 - 2382
Alignment:
Q  2 ttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttg 65  Q
    ||||||| |||||||||||||||||||||||||||| |||||| |||| |||||||||||||||    
T  2319 ttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgcttgtcctctctccttg 2382  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 21711591 - 21711528
Alignment:
Q  2 ttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttg 65  Q
    ||||||| |||||||||||||||||||||||||||| |||||| |||| |||||||||||||||    
T  21711591 ttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgcttgtcctctctccttg 21711528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 2259451 - 2259390
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcc 62  Q
    ||||||||  |||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  2259451 tttcccgggatgccaacctagttgggatgtcggtgtttcctcttgatgcatgtccactctcc 2259390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 15614762 - 15614822
Alignment:
Q  2 ttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcc 62  Q
    ||||||| |||||||||||||||||||||||||||| |||||| |||| ||||||||||||    
T  15614762 ttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgcttgtcctctctcc 15614822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24765555 - 24765501
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcc 55  Q
    ||||||||  |||||| ||||||||||||||||| ||||||||| ||||||||||    
T  24765555 tttcccgggatgccaatctagttgggatgtcggtatttcctcttgatgcatgtcc 24765501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 4120552 - 4120604
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcc 62  Q
    |||||||||||||||||||||||||||| |||||| |||  | ||||||||||    
T  4120552 gtgccaacctagttgggatgtcggtgttccctcttgatgtttatcctctctcc 4120604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 24122975 - 24123031
Alignment:
Q  14 caacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgcctag 70  Q
    ||||||||||| ||||||||||||||||||| |||  |||||  |||||||||||||    
T  24122975 caacctagttgagatgtcggtgtttcctcttgatgtctgtcccttctccttgcctag 24123031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 5781124 - 5781069
Alignment:
Q  11 tgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||||||||||||||||| |||| |||||| |||  ||||||| ||||||||    
T  5781124 tgccaacctagttgggatgtcgatgttgcctcttaatgtctgtcctccctccttgc 5781069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 25538844 - 25538887
Alignment:
Q  20 agttgggatgtcggtgtttcctcttcatgcatgtcctctctcct 63  Q
    |||||| |||||||||||||||||| ||||||||||| ||||||    
T  25538844 agttggaatgtcggtgtttcctcttgatgcatgtcctatctcct 25538887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 19068739 - 19068683
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||||||||| |||||||| |||| |||||| |||  ||||||||||| ||||    
T  19068739 gtgccaacctagtttggatgtcgatgttgcctcttaatgtctgtcctctctcattgc 19068683  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 13575025 - 13575086
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcc 62  Q
    |||||||| |||||||||||||||||||||||||||| |||||| ||||||||| |||||||    
T  13575025 tttcccggagtgccaacctagttgggatgtcggtgttccctcttgatgcatgtcttctctcc 13575086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 13577564 - 13577625
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcc 62  Q
    |||||||| |||||||||||||||||||||||||||| |||||| ||||||||| |||||||    
T  13577564 tttcccggagtgccaacctagttgggatgtcggtgttccctcttgatgcatgtcttctctcc 13577625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20898986 - 20899051
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    ||||| || |||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  20898986 tttcctggggtgccaacctagttgggatgtcggtgttgcctcttgatgcttgtcctctctccttgc 20899051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 24617783 - 24617733
Alignment:
Q  5 ccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcc 55  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  24617783 ccggggtgccaacctagttgggatgtcggtgtttcctcttgatgcatgtcc 24617733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 13565945 - 13565998
Alignment:
Q  9 tgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcc 62  Q
    |||||||||||||||||||||||| |||| |||||| |||||||||||||||||    
T  13565945 tgtgccaacctagttgggatgtcgttgttccctcttgatgcatgtcctctctcc 13565998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 14641461 - 14641521
Alignment:
Q  2 ttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcc 62  Q
    ||||||| |||||||||||||||||||||||||||| |||||| |||  ||||||||||||    
T  14641461 ttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctcc 14641521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 8483683 - 8483632
Alignment:
Q  4 cccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcc 55  Q
    ||||| |||||||||||||||||||||| |||||||||||| ||||||||||    
T  8483683 cccggggtgccaacctagttgggatgtccgtgtttcctcttgatgcatgtcc 8483632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 15141958 - 15141904
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcc 55  Q
    ||||||||  |||||||||||||||||||||||||||||||||| ||||| ||||    
T  15141958 tttcccgggttgccaacctagttgggatgtcggtgtttcctcttgatgcacgtcc 15141904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 11319502 - 11319555
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcct 63  Q
    ||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||    
T  11319502 gtgccaacctagttgagatgttggtgcttcctcttgatgcatgtcctctctcct 11319555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 13570489 - 13570550
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcc 62  Q
    |||| ||| ||||||| ||||||||||||| |||||| |||||| |||||||||||||||||    
T  13570489 tttctcggggtgccaatctagttgggatgtaggtgttccctcttgatgcatgtcctctctcc 13570550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 12435987 - 12436043
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    ||||||||||||||||||||||| || | |||| | |||||||||||||||||||||    
T  12435987 gtgccaacctagttgggatgtcgatgatgcctcctgatgcatgtcctctctccttgc 12436043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 15050081 - 15050036
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcc 55  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  15050081 gtgccaacctagttgggatatcgttgtttcctcttgatgcatgtcc 15050036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 24205493 - 24205546
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcct 63  Q
    |||||||| |||||||||||||| | ||||||||  ||||||||||||||||||    
T  24205493 gtgccaacttagttgggatgtcgttctttcctctcgatgcatgtcctctctcct 24205546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 9351178 - 9351116
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcct 63  Q
    |||| ||| ||||||||||||||||||||||| ||||  || || |||||||||| |||||||    
T  9351178 tttctcggggtgccaacctagttgggatgtcgatgttgtctattgatgcatgtccactctcct 9351116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 22705348 - 22705382
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctctt 44  Q
    |||||||||||||||||||||||||||| ||||||    
T  22705348 gtgccaacctagttgggatgtcggtgttacctctt 22705382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 34338139 - 34338085
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcctt 64  Q
    ||||||||||||||||||||||| || |||||||| |||  |||| |||||||||    
T  34338139 gtgccaacctagttgggatgtcgatgattcctcttgatggctgtcatctctcctt 34338085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 9344511 - 9344564
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcct 63  Q
    ||||||||||||||||||||||| ||||| ||||| ||| ||||| | ||||||    
T  9344511 gtgccaacctagttgggatgtcgttgttttctcttgatgtatgtcatttctcct 9344564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14372240 - 14372175
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||| ||| ||||||||||||||||||||||| |||| |||||| |||  |||||  |||||||||    
T  14372240 tttctcggagtgccaacctagttgggatgtcgatgttgcctcttgatgtctgtccattctccttgc 14372175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 26592564 - 26592511
Alignment:
Q  13 ccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    ||||||||||||| ||||| |||||  ||||| |||||||| ||||||||||||    
T  26592564 ccaacctagttggaatgtcagtgttctctcttgatgcatgttctctctccttgc 26592511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 30884437 - 30884486
Alignment:
Q  14 caacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcct 63  Q
    ||||||||||||||||||| || |||  ||| ||||||||||||||||||    
T  30884437 caacctagttgggatgtcgttgattctccttgatgcatgtcctctctcct 30884486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 18306773 - 18306717
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    ||||||||||||||||||||||| || |  ||| | |||| ||||||||||||||||    
T  18306773 gtgccaacctagttgggatgtcgatgatgactcctgatgcctgtcctctctccttgc 18306717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 24373551 - 24373599
Alignment:
Q  13 ccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctc 61  Q
    ||||||||||||||||||| ||| |||||| | ||||||||||| ||||    
T  24373551 ccaacctagttgggatgtcagtgcttcctcgtgatgcatgtcctttctc 24373599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 32569871 - 32569919
Alignment:
Q  18 ctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    ||||||||||||||| |||| |||||| |||  ||||||||||||||||    
T  32569871 ctagttgggatgtcgatgttgcctcttaatgactgtcctctctccttgc 32569919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 11439 - 11499
Alignment:
Q  2 ttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcc 62  Q
    ||||||| |||||||||||||||||||||||||||| |||||| |||  ||||||||||||    
T  11439 ttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctcc 11499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 14374 - 14319
Alignment:
Q  11 tgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||||||||||||||||| || | |||||| |||  ||||||||||||||||    
T  14374 tgccaacctagttgggatgtcgatgatgcctcttgatgtctgtcctctctccttgc 14319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 40926515 - 40926460
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcct 56  Q
    |||||||| ||||||||||||||||||||||| ||||||||| | |||||||||||    
T  40926515 tttcccggggtgccaacctagttgggatgtcgatgtttcctcctgatgcatgtcct 40926460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 12102845 - 12102898
Alignment:
Q  13 ccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    ||||| |||||||||||||| |||| |||||| ||| |||||||||||||||||    
T  12102845 ccaacatagttgggatgtcgatgttgcctcttgatgtatgtcctctctccttgc 12102898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 13619138 - 13619093
Alignment:
Q  11 tgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcct 56  Q
    ||||||||||||||||||||  |||||||||||| |||||||||||    
T  13619138 tgccaacctagttgggatgttagtgtttcctcttgatgcatgtcct 13619093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 28522885 - 28522938
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcct 63  Q
    ||||||||||||||||||||||  ||||||||||| |||  |||||||||||||    
T  28522885 gtgccaacctagttgggatgtcaatgtttcctcttgatgtctgtcctctctcct 28522938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 29216636 - 29216692
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||| || ||||||||||| || | |||||| |||||||||||||||||||||    
T  29216636 gtgccaacttaattgggatgtcgatgatgcctcttgatgcatgtcctctctccttgc 29216692  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 29329935 - 29329991
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||||||| || ||||||||||| || | |||||| |||||||||||||||||||||    
T  29329935 gtgccaacttaattgggatgtcgatgatgcctcttgatgcatgtcctctctccttgc 29329991  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 6083769 - 6083802
Alignment:
Q  11 tgccaacctagttgggatgtcggtgtttcctctt 44  Q
    |||||||||||| |||||||||||||||||||||    
T  6083769 tgccaacctagtcgggatgtcggtgtttcctctt 6083802  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17151319 - 17151360
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctc 42  Q
    |||||||| |||||||||||||||| ||||| ||||||||||    
T  17151319 tttcccggagtgccaacctagttggcatgtcagtgtttcctc 17151360  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 36802319 - 36802254
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||| ||| ||||||||||||||| ||||||| |||| |||||| || |  |||||||||||||||    
T  36802319 tttctcggggtgccaacctagttgagatgtcgatgttgcctcttaatacccgtcctctctccttgc 36802254  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 38376909 - 38376856
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcct 63  Q
    |||||||||||||| |||||||| || | |||||| |||||||||| |||||||    
T  38376909 gtgccaacctagttaggatgtcgatgatacctcttgatgcatgtccactctcct 38376856  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 17377551 - 17377499
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcc 62  Q
    ||||||||||||||| ||| ||| |||| |||||| |||||||||| ||||||    
T  17377551 gtgccaacctagttgagatatcgttgttgcctcttgatgcatgtccactctcc 17377499  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 20477458 - 20477514
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    ||||||||||||||||||||||| || | |||||| |||  |||||| |||||||||    
T  20477458 gtgccaacctagttgggatgtcgatgatgcctcttgatgtctgtcctttctccttgc 20477514  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 24933750 - 24933718
Alignment:
Q  2 ttcccggtgtgccaacctagttgggatgtcggt 34  Q
    ||||||| |||||||||||||||||||||||||    
T  24933750 ttcccggagtgccaacctagttgggatgtcggt 24933718  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28948895 - 28948931
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtt 37  Q
    |||||||| |||||||| |||||||||||||||||||    
T  28948895 tttcccggggtgccaacatagttgggatgtcggtgtt 28948931  T

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Target: scaffold0166 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8052 - 7998
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcc 55  Q
    ||||||||  |||||| ||||||||||||||||| ||||||||| ||||||||||    
T  8052 tttcccgggatgccaatctagttgggatgtcggtatttcctcttgatgcatgtcc 7998  T

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Target: scaffold0176 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 26476 - 26544
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgcctag 70  Q
    ||||||||  |||||||||| | ||||||| ||||||||||||  |||||||||||||||| ||||||||    
T  26476 tttcccgggatgccaacctaat-gggatgttggtgtttcctctcgatgcatgtcctctctctttgcctag 26544  T

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Target: scaffold0292 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 21253 - 21309
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    ||||||||||||||||||||||| || | |||||| |||| ||||| ||||||||||    
T  21253 gtgccaacctagttgggatgtcgatgatgcctcttgatgcctgtccactctccttgc 21309  T

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Target: scaffold0114 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 3020 - 2976
Alignment:
Q  11 tgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcc 55  Q
    |||||||||| | ||||||||||||||||||||| ||||||||||    
T  3020 tgccaacctaatcgggatgtcggtgtttcctcttgatgcatgtcc 2976  T

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Target: scaffold0006 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 36714 - 36662
Alignment:
Q  13 ccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttg 65  Q
    |||||||||||||||||||| |||| |||||| ||| |||| |||||||||||    
T  36714 ccaacctagttgggatgtcgatgttgcctcttgatgtatgtactctctccttg 36662  T

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Target: scaffold0196 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 797 - 831
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctctt 44  Q
    |||||||||||||||||||||||||||| ||||||    
T  797 gtgccaacctagttgggatgtcggtgttgcctctt 831  T

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Target: scaffold0607 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 361 - 296
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctccttgc 66  Q
    |||| ||| ||||||| |||||||| | |||| |||| |||||| ||||||||||||||| |||||    
T  361 tttctcggggtgccaaactagttggtaagtcgatgttgcctcttgatgcatgtcctctcttcttgc 296  T

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Target: scaffold0257 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 16233 - 16282
Alignment:
Q  14 caacctagttgggatgtcggtgtttcctcttcatgcatgtcctctctcct 63  Q
    |||||||||||||||||||||| || ||||| || |||||||| ||||||    
T  16233 caacctagttgggatgtcggtgctttctcttgatacatgtcctttctcct 16282  T

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Target: scaffold0356 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13749 - 13781
Alignment:
Q  1 tttcccggtgtgccaacctagttgggatgtcgg 33  Q
    |||||||| ||||||||||||||||||||||||    
T  13749 tttcccggggtgccaacctagttgggatgtcgg 13781  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 30013 - 29985
Alignment:
Q  11 tgccaacctagttgggatgtcggtgtttc 39  Q
    |||||||||||||||||||||||||||||    
T  30013 tgccaacctagttgggatgtcggtgtttc 29985  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 52742 - 52774
Alignment:
Q  10 gtgccaacctagttgggatgtcggtgtttcctc 42  Q
    ||||||||||||||||||| |||||||||||||    
T  52742 gtgccaacctagttgggatttcggtgtttcctc 52774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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