View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16803_high_31 (Length: 330)

Name: NF16803_high_31
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16803_high_31
NF16803_high_31
[»] chr4 (4 HSPs)
chr4 (22-313)||(41135143-41135433)
chr4 (1-30)||(32898972-32899001)
chr4 (1-30)||(32899232-32899261)
chr4 (1-29)||(55562860-55562888)
[»] chr1 (1 HSPs)
chr1 (1-34)||(28886118-28886151)
[»] chr5 (2 HSPs)
chr5 (1-32)||(7940444-7940475)
chr5 (2-30)||(4976022-4976050)
[»] chr7 (2 HSPs)
chr7 (1-31)||(30895553-30895583)
chr7 (2-30)||(23109343-23109371)
[»] chr3 (2 HSPs)
chr3 (1-35)||(46845220-46845254)
chr3 (1-29)||(12906146-12906174)
[»] chr8 (2 HSPs)
chr8 (1-30)||(5162579-5162608)
chr8 (2-34)||(18111706-18111738)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 22 - 313
Target Start/End: Original strand, 41135143 - 41135433
Alignment:
Q  22 gtatattttttatacgtacccaaaaccttacaagacatatagcataatcacaaaaacaacattcctttagaaaacatcaattctaccccacaatatatat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41135143 gtatattttttatacgtacccaaaaccttacaagacatatagcataatcacaaaaacaacattcctttagaaaacatcaattctaccccacaatatatat 41135242  T
Q  122 gtacaattttagtgtctatgtaggagaacaatgtgcttcaactaataactaatgcatttggatttccacccttagtttgtaagttggttacactcaaatt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41135243 gtacaattttagtgtctatgtaggagaacaatgtgcttcaactaataactaatgcatttggatttcca-ccttagtttgtaagttggttacactcaaatt 41135341  T
Q  222 tgggaccacttgattaacaccacccaaattctcaatctcctcagcttgatacgtagagtgaacaccataaagcacataaaacatggtaataa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41135342 tgggaccacttgattaacaccacccaaattctcaatctcctcagcttgatacgtagagtgaacaccataaagcacataaaacatggtaataa 41135433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 32899001 - 32898972
Alignment:
Q  1 ttataattagggacggaggtagtatatttt 30  Q
    ||||||||||||||||||||||||||||||    
T  32899001 ttataattagggacggaggtagtatatttt 32898972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 32899232 - 32899261
Alignment:
Q  1 ttataattagggacggaggtagtatatttt 30  Q
    ||||||||||||||||||||||||||||||    
T  32899232 ttataattagggacggaggtagtatatttt 32899261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 55562888 - 55562860
Alignment:
Q  1 ttataattagggacggaggtagtatattt 29  Q
    |||||||||||||||||||||||||||||    
T  55562888 ttataattagggacggaggtagtatattt 55562860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 28886118 - 28886151
Alignment:
Q  1 ttataattagggacggaggtagtatattttttat 34  Q
    ||||||||||||||||||||||||||||||||||    
T  28886118 ttataattagggacggaggtagtatattttttat 28886151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 7940475 - 7940444
Alignment:
Q  1 ttataattagggacggaggtagtatatttttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  7940475 ttataattagggacggaggtagtatatttttt 7940444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 4976050 - 4976022
Alignment:
Q  2 tataattagggacggaggtagtatatttt 30  Q
    |||||||||||||||||||||||||||||    
T  4976050 tataattagggacggaggtagtatatttt 4976022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 30895583 - 30895553
Alignment:
Q  1 ttataattagggacggaggtagtatattttt 31  Q
    |||||||||||||||||||||||||||||||    
T  30895583 ttataattagggacggaggtagtatattttt 30895553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 23109343 - 23109371
Alignment:
Q  2 tataattagggacggaggtagtatatttt 30  Q
    |||||||||||||||||||||||||||||    
T  23109343 tataattagggacggaggtagtatatttt 23109371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 46845254 - 46845220
Alignment:
Q  1 ttataattagggacggaggtagtatattttttata 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  46845254 ttataattagggacggaggtagtacattttttata 46845220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 12906174 - 12906146
Alignment:
Q  1 ttataattagggacggaggtagtatattt 29  Q
    |||||||||||||||||||||||||||||    
T  12906174 ttataattagggacggaggtagtatattt 12906146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 5162579 - 5162608
Alignment:
Q  1 ttataattagggacggaggtagtatatttt 30  Q
    ||||||||||||||||||||||||||||||    
T  5162579 ttataattagggacggaggtagtatatttt 5162608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 18111738 - 18111706
Alignment:
Q  2 tataattagggacggaggtagtatattttttat 34  Q
    ||||||||||||| |||||||||||||||||||    
T  18111738 tataattagggacagaggtagtatattttttat 18111706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University