View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_high_32 (Length: 325)
Name: NF16803_high_32
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_high_32 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 3049400 - 3049088
Alignment:
| Q |
19 |
ataagtttacctagattatggatcaaatacatactaatattatgtccattataaaaacaaaagacatttgttaaaatactcatattcactttgatacgac |
118 |
Q |
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| T |
3049400 |
ataagtttacctagattatggatcaaatacatactaatattctgtccattataaaaacaaaagacatttgttaaaatactcatattcactttgttacgac |
3049301 |
T |
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| Q |
119 |
ctcggtagatagaagaattcgtgaccaagtagagttccacttgattgcattttgttatatctcccttttctaattttatgattttgttattttcctttcg |
218 |
Q |
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| T |
3049300 |
ctcgttagataaaagatttcgtgaccaagtagagttgcacttgatttcattttgt--tatctcccttttctaattttatgattttgttattttcctttcg |
3049203 |
T |
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| Q |
219 |
attatgcaagttgatatgccaagattgtatatatgatacaacagtgaagcaattcagttatg--------taacaggttttggtttcttcactaatttct |
310 |
Q |
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| T |
3049202 |
attatgcaagttgatatgccaagattgtatatataatataacagtgaagcaattcagttatgttgaataataacaggttttggtttcttcactaatttct |
3049103 |
T |
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| Q |
311 |
catctattttctctc |
325 |
Q |
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| T |
3049102 |
catctattttctctc |
3049088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 27758360 - 27758255
Alignment:
| Q |
182 |
ccttttctaattttatgattttgttattttcctttc----gattatgcaagttgatatgccaagattg--tatatatgatacaacagtgaagcaattcag |
275 |
Q |
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| T |
27758360 |
ccttttctaaatttatgattatgttatttcccttttcttagattatgcaagttgttatgctaagattgactatatatgatgtaatagtgaaccaattcag |
27758261 |
T |
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| Q |
276 |
ttatgt |
281 |
Q |
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| T |
27758260 |
atatgt |
27758255 |
T |
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