View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_high_47 (Length: 265)
Name: NF16803_high_47
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 29487504 - 29487281
Alignment:
| Q |
18 |
agaccctttcgagccataacagttcgaccaaacatgaaagaatgatgcggataaacgtaaccaatcaaatgaaaccaaatcaaccaagatttgtgaaaat |
117 |
Q |
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| T |
29487504 |
agaccctttcgagtcataacagttcgaccaaacatgaaagaatgacgcggataaacataaccaatcaaatgaaaccaaatcaaccaagatttgtgaaaat |
29487405 |
T |
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| Q |
118 |
ctagacagaccgaccaaaatttgtatactaatagtgtagaaagttaattaatcttatttatgaaagtggcaatttaggaaaataactcatagtcattaac |
217 |
Q |
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| T |
29487404 |
ctagacagaccgaccaaactttgtatactaa-----tagaaagttaattaatcttatttatgaaagtggcaatttaggaaaataactcatagtcattaac |
29487310 |
T |
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| Q |
218 |
acgccaaactctcaattggtatagcaccc |
246 |
Q |
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| T |
29487309 |
acgccaaactctcaattggtatagcaccc |
29487281 |
T |
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