View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_high_49 (Length: 257)
Name: NF16803_high_49
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_high_49 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 3951116 - 3951348
Alignment:
| Q |
13 |
aatatatgctgtaaatactctgcttatcaatttcaaaattgtggttatgaattaatgctgaaaattttcgatttatcaacgagacagtatgtaattatag |
112 |
Q |
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| T |
3951116 |
aatatatgctgtaaatactctgcttatcaatttcaaatttgtggttatgaattaatgctgaaaattttcgatttatcaacgagacagtatgtaattatag |
3951215 |
T |
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| Q |
113 |
ttttcagttctatatttgtagatattgttagagctgtaaagtaagacaaaaacttttttgtgac---cttccatatatacaatgtcctgcacacttttat |
209 |
Q |
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| T |
3951216 |
ttttcagttctatatttgtagatattgttagagctttaaagtaagacaaaaacttttttgtgaccttcttccatatatataatgtcctgcacacttttat |
3951315 |
T |
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| Q |
210 |
gcagaaaccgttgtataataatactaaaaattt |
242 |
Q |
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| T |
3951316 |
gcagaaaccgttgtataataatactaaaaattt |
3951348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 4027646 - 4027540
Alignment:
| Q |
121 |
tctatatttgtagatattgttagagctgtaaagtaagacaaaaacttttttgtgaccttccatatatacaatgtcctgcacacttttatgcagaaaccgt |
220 |
Q |
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| T |
4027646 |
tctatatttgtagatattgtatgagctgtgaagtaagaccaaaacctttttgtgaccttccttatattctatgtcctgcacac--ttatgtagaaatcat |
4027549 |
T |
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| Q |
221 |
tgtataata |
229 |
Q |
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||||||||| |
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| T |
4027548 |
tgtataata |
4027540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 4013367 - 4013305
Alignment:
| Q |
118 |
agttctatatttgtagatattgttagagctgtaaagtaagacaaaaacttttttgtgaccttc |
180 |
Q |
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| T |
4013367 |
agttctatatttgtagatattgtatgagctgtagagtaagaccaaaacatttttgttaccttc |
4013305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 13400477 - 13400441
Alignment:
| Q |
13 |
aatatatgctgtaaatactctgcttatcaatttcaaa |
49 |
Q |
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| T |
13400477 |
aatatatgctgtaaatactctgcttatcaatttcaaa |
13400441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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