View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_high_52 (Length: 252)
Name: NF16803_high_52
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_high_52 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 252
Target Start/End: Original strand, 29442865 - 29443096
Alignment:
| Q |
21 |
atttaatagacaacatgaattaaaacaagttaattgtcattctgatccctaggtcatgaatatattgaaattactaaaacaaccttgagtatgtctttat |
120 |
Q |
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| T |
29442865 |
atttaatagacaacatgaattaaaacaagttaattgtcattctgatccctaggtcatgaatatattgaaattactaaaacaaccttgaatgtgtctttat |
29442964 |
T |
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| Q |
121 |
tggtgattttacggatcaaactaaataatgaaagacatattagagaaccaaactaactaacaaaagacaaatttgatgaccaaactcgttaaaaaataca |
220 |
Q |
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| T |
29442965 |
tggtgattttacggatcaaactaaataatgaaagacatatcagagaaccaaactaattaacaaaagacaaatttgatgaccaaactagttaaaaaataca |
29443064 |
T |
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| Q |
221 |
catccgaagatatttttgtattttgatatatt |
252 |
Q |
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| T |
29443065 |
catccgaagagattttcatattttgatatatt |
29443096 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 10002650 - 10002695
Alignment:
| Q |
151 |
aaagacatattagagaaccaaactaactaacaaaagacaaatttga |
196 |
Q |
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| T |
10002650 |
aaagacacattcgagaatcaaactaactaacgaaagacaaatttga |
10002695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 10836248 - 10836288
Alignment:
| Q |
167 |
accaaactaactaacaaaagacaaatttgatgaccaaactc |
207 |
Q |
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| T |
10836248 |
accaaactaactaacgaaagacacatttgaggaccaaactc |
10836288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 43143958 - 43144027
Alignment:
| Q |
134 |
gatcaaactaaataatgaaagacatattagagaaccaaactaactaacaaaagacaaatttgatgaccaa |
203 |
Q |
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| T |
43143958 |
gatcaaactaacaaatgaaagacatattagaggaccaaattaagttacagaaaacatatttgaggaccaa |
43144027 |
T |
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