View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_high_63 (Length: 208)
Name: NF16803_high_63
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_high_63 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 41337315 - 41337137
Alignment:
| Q |
19 |
tcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttca |
118 |
Q |
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| T |
41337315 |
tcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttca |
41337216 |
T |
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| Q |
119 |
ctctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggccctatgcttc |
197 |
Q |
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| T |
41337215 |
ctctacttaccttttgaagtattttaatagaaggatacaagtcagcaatacaaaattctcccaataggcccaatgcttc |
41337137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 31178459 - 31178602
Alignment:
| Q |
38 |
tgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaag |
137 |
Q |
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| T |
31178459 |
tgtgaatgtttttatgatcatcgacgatatcttgcaatatcatatcaatctctttatgaaacttttcaaatttggtcttcaccccactcacccgttgaag |
31178558 |
T |
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| Q |
138 |
tattttaatagaaggatacaaatcagcaatacaaaattctccca |
181 |
Q |
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| T |
31178559 |
cattttaatagaaggatacacatcagcaatacaaaatcctccca |
31178602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 181
Target Start/End: Complemental strand, 31225309 - 31225166
Alignment:
| Q |
38 |
tgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaag |
137 |
Q |
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| T |
31225309 |
tgtgaatgtttttatgatcatcgatgatatcttgcaatatcatatcaatctctttatgaagcttttcaactttggtcttcgccctactcacccattgaag |
31225210 |
T |
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| Q |
138 |
tattttaatagaaggatacaaatcagcaatacaaaattctccca |
181 |
Q |
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| T |
31225209 |
catttttatagaaggatacacatcaacaatacaaaatcctccca |
31225166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 41369794 - 41369731
Alignment:
| Q |
121 |
ctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaata |
184 |
Q |
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| T |
41369794 |
ctacttaccctttgaagtattttaatagaaggatacaaatcagcaatgcaaaatccttccaata |
41369731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 31188504 - 31188647
Alignment:
| Q |
38 |
tgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaag |
137 |
Q |
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| T |
31188504 |
tgtgaatgtttttatgatcaacgatgatatcttgcaatatcatatcaatctctttatgaagcttttcaactttcgtcttcgccctactcacccattgaaa |
31188603 |
T |
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| Q |
138 |
tattttaatagaaggatacaaatcagcaatacaaaattctccca |
181 |
Q |
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| T |
31188604 |
cattttaacagaaggatacacatcagcaatacaaaattctccca |
31188647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 41366454 - 41366400
Alignment:
| Q |
131 |
tttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaatag |
185 |
Q |
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| T |
41366454 |
tttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatag |
41366400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 41431319 - 41431274
Alignment:
| Q |
39 |
gtgattgtttctatgatcattgatgatgtcttgcaatatcctatca |
84 |
Q |
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| T |
41431319 |
gtgactgtttttatgatcattgatgatgtcttgcaatatcgtatca |
41431274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 41286320 - 41286280
Alignment:
| Q |
141 |
tttaatagaaggatacaaatcagcaatacaaaattctccca |
181 |
Q |
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| T |
41286320 |
tttaatagaaggatacaaatcaacaatgcaaaatcctccca |
41286280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 41324362 - 41324322
Alignment:
| Q |
132 |
ttgaagtattttaatagaaggatacaaatcagcaatacaaa |
172 |
Q |
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| T |
41324362 |
ttgaagcaatttaatagaaggatacaaatcaacaatacaaa |
41324322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 17249277 - 17249336
Alignment:
| Q |
123 |
acttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaa |
182 |
Q |
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| T |
17249277 |
acttacccttttaagtattttgatagaaggatacaaatcaacaatacaaaatcctcccaa |
17249336 |
T |
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