View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_high_9 (Length: 501)
Name: NF16803_high_9
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 40816476 - 40815996
Alignment:
| Q |
18 |
acaactgtgctgctaagctgactgatcagtctgagattattatatatacgtcaaaaaacagtagtagtaccacagcctgtatgtaagtttcagacaatat |
117 |
Q |
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| T |
40816476 |
acaactgtgttgctaagctgactgatcagtctgagattattatatatacgtcaaaaaacagtagtagtaccacagccagtatgtaagtttcagacaatat |
40816377 |
T |
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| Q |
118 |
caaaatagactcatgttacatggttcgattaaatttctaaatgtacaatacacacaaaataaattcaatatatagtaagtatttttacatacaaattcga |
217 |
Q |
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| T |
40816376 |
caaaatagactcatgttacatggttcgattaaatttctaaatgtacaatacactcaaaataaattcaatata--gtaagtatttttacatacaaattcga |
40816279 |
T |
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| Q |
218 |
caagatgatataaaattattttg---------------tatataacttttcattgtctatatactttttcattttatgtaaatggatttcttcactatat |
302 |
Q |
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| T |
40816278 |
caagatgatataaaattattttgggaaaaataattttgtatataacttttcattgtctatatactttttcattttatgtaaatggatttcttcactatat |
40816179 |
T |
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| Q |
303 |
ttgtaacagatatataaactgaataggtttctacactaaaatagaaaaataaatttcataggtccccttaacccaatataatcatatttgaggcaccaac |
402 |
Q |
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|| ||||||||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
40816178 |
ttttaacagataaataaagtggatagttttctacactaaaatagaaaaataaatttcataggtccccttaacccactataattatatttgaggcaccaac |
40816079 |
T |
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| Q |
403 |
gaaaattaaatatggatatctccatcaattattccatctgactccgttgataaagcatataatttttaagaatatgttatttg |
485 |
Q |
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| T |
40816078 |
gaaaattaaatatgaatatctctatcaattattccatctgactctcttgataaagcatataatttttaagaatatgttatttg |
40815996 |
T |
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