View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16803_low_11 (Length: 491)
Name: NF16803_low_11
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 5 - 403
Target Start/End: Original strand, 41548102 - 41548500
Alignment:
| Q |
5 |
agtgagaagaaattatggtcaatgttgagaagtagtccgtcaaggttgaagttggggggtgagtatttgagaattgagagtattccgacgttcaagtgac |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41548102 |
agtgataagaaattatggtcaatgttgagaagtagtccgtcaaggttgaagttggggg-tgggtatttgagaattgagagtattccgacgttcaagtgac |
41548200 |
T |
|
| Q |
105 |
tacgagagtaaagagtgtgaggtgttgtaaagaaataaattgtgtacctttagttggtggtgaaggatgcctttttataggcatggatgtgtagccgtgg |
204 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41548201 |
tacaagagtaaagagtgtgaggtgttgtaaagatataaattgtgtacctttagttggtggtgaaggatgcctttttataggcatggatgtgtagccgtgg |
41548300 |
T |
|
| Q |
205 |
agggttgatgagaggtcgttacaaacgacgct-catcaatgttgagttccgactttcattacaagttattgaggtgttacatattcatcgaatccaaagc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41548301 |
agggttgatgagaggtcgttacaaacgacgctccatcaatgttgagttccgactttcattacaagttattgaggtgttacatattcatagaatccaaagc |
41548400 |
T |
|
| Q |
304 |
tagttgttaaggtgctttgttggacggagaggacccaagtttgctcgaacctcatcatagttggatttttgagtattcgagacttaatacataaactatg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41548401 |
tagttgttaaggtgctttgttggacggagaggacccaagtttgctcgaacctcatcatagttggatttttgagtattcgagacttaatacataaactatg |
41548500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 399 - 475
Target Start/End: Original strand, 41548828 - 41548904
Alignment:
| Q |
399 |
ctatgagtcttgggtgtgtgtagaataaaaagataaatgtataatccacttttattttttagggttaacagtgtttt |
475 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41548828 |
ctatgagtcttgggtgtgtgcagaacaaaaagataaatgtataatccacttttatttttcagggttaacagtgtttt |
41548904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University