View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16803_low_12 (Length: 468)

Name: NF16803_low_12
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16803_low_12
NF16803_low_12
[»] chr5 (19 HSPs)
chr5 (177-457)||(41337137-41337417)
chr5 (1-87)||(41337480-41337566)
chr5 (228-441)||(31188434-31188647)
chr5 (238-441)||(31178399-31178602)
chr5 (229-441)||(31225166-31225378)
chr5 (182-350)||(41316335-41316503)
chr5 (182-427)||(41332238-41332483)
chr5 (258-444)||(41369731-41369918)
chr5 (182-290)||(41286404-41286512)
chr5 (182-445)||(41366400-41366660)
chr5 (182-350)||(41328302-41328470)
chr5 (182-432)||(41324322-41324572)
chr5 (2-94)||(41286859-41286951)
chr5 (186-350)||(41310595-41310759)
chr5 (2-94)||(41332666-41332758)
chr5 (299-344)||(41431274-41431319)
chr5 (2-94)||(41328733-41328825)
chr5 (2-57)||(31178052-31178107)
chr5 (401-441)||(41286280-41286320)
[»] chr4 (2 HSPs)
chr4 (182-442)||(17249076-17249336)
chr4 (2-84)||(17248932-17249014)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 177 - 457
Target Start/End: Complemental strand, 41337417 - 41337137
Alignment:
Q  177 agtaaactaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggt 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337417 agtaaactaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggt 41337318  T
Q  277 cttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtctt 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337317 cttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtctt 41337218  T
Q  377 cactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggccctatgcttc 457  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  41337217 cactctacttaccttttgaagtattttaatagaaggatacaagtcagcaatacaaaattctcccaataggcccaatgcttc 41337137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 41337566 - 41337480
Alignment:
Q  1 attgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaatgg 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337566 attgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaatgg 41337480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 228 - 441
Target Start/End: Original strand, 31188434 - 31188647
Alignment:
Q  228 tgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgt 327  Q
    ||||||||| ||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||  |||||| |    
T  31188434 tgtgagtgatcattttcctgttgaatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcaacgatgatat 31188533  T
Q  328 cttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaat 427  Q
    ||||||||||| |||||||||||   || |   | |||||| | |||||| | ||||| |||  |||||  ||||||| ||||||||||| |||||||||    
T  31188534 cttgcaatatcatatcaatctctttatgaagcttttcaactttcgtcttcgccctactcacccattgaaacattttaacagaaggatacacatcagcaat 31188633  T
Q  428 acaaaattctccca 441  Q
    ||||||||||||||    
T  31188634 acaaaattctccca 31188647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 238 - 441
Target Start/End: Original strand, 31178399 - 31178602
Alignment:
Q  238 cattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatat 337  Q
    ||||||| ||||||| ||||| |||  |||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||| || ||| |||||||||||    
T  31178399 cattttcctgttgaatcttgataagtgcatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgacgatatcttgcaatat 31178498  T
Q  338 cctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattct 437  Q
    | |||||||||||   || ||  | |||| | |||||||||| | ||| |||  |||||| ||||||||||||||||||| |||||||||||||||| ||    
T  31178499 catatcaatctctttatgaaacttttcaaatttggtcttcaccccactcacccgttgaagcattttaatagaaggatacacatcagcaatacaaaatcct 31178598  T
Q  438 ccca 441  Q
    ||||    
T  31178599 ccca 31178602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 229 - 441
Target Start/End: Complemental strand, 31225378 - 31225166
Alignment:
Q  229 gtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtc 328  Q
    |||||||  ||||||| ||||| | ||||||||||  ||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||| |||||| ||    
T  31225378 gtgagtgctcattttcctgttgtatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgatgatatc 31225279  T
Q  329 ttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaata 428  Q
    |||||||||| |||||||||||   || |   | |||||| |||||||| | ||||| |||  |||||| ||||| ||||||||||||| |||| |||||    
T  31225278 ttgcaatatcatatcaatctctttatgaagcttttcaactttggtcttcgccctactcacccattgaagcatttttatagaaggatacacatcaacaata 31225179  T
Q  429 caaaattctccca 441  Q
    |||||| ||||||    
T  31225178 caaaatcctccca 31225166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 182 - 350
Target Start/End: Complemental strand, 41316503 - 41316335
Alignment:
Q  182 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 281  Q
    ||||||||| |||| |||||||||||| |||||||| || || ||||||||||||  |||||| ||||||| ||||||||||||||| ||||| ||||||    
T  41316503 actaacctggatgattgattttatattgtcatcagttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatcttca 41316404  T
Q  282 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctct 350  Q
    || ||||||  ||   ||||| || || | ||||| | |||||||||||||||| || |||||| ||||    
T  41316403 tcattgctttcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgtcatatcaagctct 41316335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 182 - 427
Target Start/End: Complemental strand, 41332483 - 41332238
Alignment:
Q  182 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 281  Q
    ||||||||| |||| |||||| ||||| ||||| || || || |||| ||||| |  |||||| ||||||| ||||||||||||||| ||||| ||||||    
T  41332483 actaacctggatgattgatttcatattgtcatcggttaaaggatgttctgagtaataattttcctgttgaatcttgagaagaacatctactagatcttca 41332384  T
Q  282 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactc 381  Q
    || ||||||| ||   ||||| || |||| ||||| | |||||||||||||| |||| |||||| |||||  || | | | || | | |||||||| | |    
T  41332383 tcgttgcttgcttccttgtgaatgcttctgtgatcgtcgatgatgtcttgcattatcatatcaagctctctatgaattttttccattttggtcttctccc 41332284  T
Q  382 tacttaccttttgaagtattttaatagaaggatacaaatcagcaat 427  Q
    |||| |    |||||| ||||||||||||||||||||||| |||||    
T  41332283 tactcatgcattgaagcattttaatagaaggatacaaatctgcaat 41332238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 258 - 444
Target Start/End: Complemental strand, 41369918 - 41369731
Alignment:
Q  258 agaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctcct-tgt 356  Q
    ||||||||||||||||||||||| |||||| ||  ||  || ||||||||| | |||||||||||||| |||||||||||  |||||  |  | || ||     
T  41369918 agaagaacatcaactaggtcttcttccttgatttcttctctatgattgtttttgtgatcattgatgatatcttgcaatataatatcatgcctttctctga 41369819  T
Q  357 aatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaata 444  Q
    | | | || | | |||||||  | ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || ||||||    
T  41369818 agtttttccattttggtctttgccctacttaccctttgaagtattttaatagaaggatacaaatcagcaatgcaaaatccttccaata 41369731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 290
Target Start/End: Complemental strand, 41286512 - 41286404
Alignment:
Q  182 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 281  Q
    ||||||||| ||||||| ||||| ||| |||||||||||||| |||| ||||||  || |||| ||||||| ||||||||||||||||| ||| ||||||    
T  41286512 actaacctggatgactgcttttaaattatcatcagtcaagggatgttatgagtgctcactttcctgttgaatcttgagaagaacatcaattagatcttca 41286413  T
Q  282 tccttgctt 290  Q
    || ||||||    
T  41286412 tctttgctt 41286404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 445
Target Start/End: Complemental strand, 41366660 - 41366400
Alignment:
Q  182 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 281  Q
    ||||||||| ||||| ||||||||||| || || |||||||| |||||||||||   |||| || |||||| ||||||||||||||| ||||| || |||    
T  41366660 actaacctggatgaccgattttatattgtcgtcggtcaagggatgttgtgagtg---atttacacgttgaatcttgagaagaacatctactagatcatca 41366564  T
Q  282 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactc 381  Q
    | ||| || | |||  ||||| |  || | ||||||| |||||| |||||||||||| ||||| ||||||  || | | | |||| | |  || |    |    
T  41366563 ttcttcctagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttccttggcc 41366464  T
Q  382 tacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaatag 445  Q
     ||||| | ||||||| ||||||||||||||||||||||| |||| | ||||| ||||||||||    
T  41366463 aacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatag 41366400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 182 - 350
Target Start/End: Complemental strand, 41328470 - 41328302
Alignment:
Q  182 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 281  Q
    ||||||||| |||| |||||| ||||| ||||| || || || |||| |||||||  |||||| ||||||| ||||||||||||||| ||||| ||||||    
T  41328470 actaacctggatgattgatttcatattgtcatcggttaaaggatgttctgagtgataattttcctgttgaatcttgagaagaacatctactagatcttca 41328371  T
Q  282 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctct 350  Q
    || ||||||| ||   ||||| |  |||| ||||| | ||||||||||||   |||| |||||||||||    
T  41328370 tcattgcttgcttccttgtgaatacttctgtgatcgtcgatgatgtcttgtgctatcatatcaatctct 41328302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 432
Target Start/End: Complemental strand, 41324572 - 41324322
Alignment:
Q  182 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 281  Q
    ||||||||| |||| ||| |||||||| ||||| || || || ||||||||||||  |||||| ||||||| ||||||||||||||| ||||| | |||     
T  41324572 actaacctggatgattgactttatattgtcatcggttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatattct 41324473  T
Q  282 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactc 381  Q
    || |||||   ||   ||||| || || | ||||| | ||| ||||||||||||||| |||||||||||   || | | | || | | ||| |||| | |    
T  41324472 tcattgctatcttccttgtgaatgcttttgtgatcgtcgataatgtcttgcaatatcatatcaatctctttgtgaagtttttccattttggccttcgccc 41324373  T
Q  382 tacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaa 432  Q
    |||| ||   |||||| | |||||||||||||||||||||| |||||||||    
T  41324372 tactcacgcattgaagcaatttaatagaaggatacaaatcaacaatacaaa 41324322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 41286951 - 41286859
Alignment:
Q  2 ttgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaatggaataaca 94  Q
    |||| ||||||| |||||| |||||| | |||| ||||   ||||||||||||||||  |||||| ||||||||||||| ||||||| |||||    
T  41286951 ttggattctttaccatctcagacatccctcataacacagcccctgacgatgtttcgccaccagcagtgaacaagtcctgtaaatggattaaca 41286859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 350
Target Start/End: Complemental strand, 41310759 - 41310595
Alignment:
Q  186 acctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatcct 285  Q
    ||||| |||| |||||| ||||| ||||| || || || |||| |||||||  |||||| |||| || ||||||||||||||| ||||| |||||||| |    
T  41310759 acctggatgattgatttcatattgtcatccgttaaaggatgttctgagtgataattttcctgtttaatcttgagaagaacatctactagatcttcatcat 41310660  T
Q  286 tgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctct 350  Q
    ||||   ||   || || || || | ||||| | ||||||||||||||||||| ||| |||||||    
T  41310659 tgctatcttccttgcgaatgcttttgtgatcgtcgatgatgtcttgcaatatcatataaatctct 41310595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 41332758 - 41332666
Alignment:
Q  2 ttgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaatggaataaca 94  Q
    |||||||||||| |||||| ||||||||||||| ||  |   |||||||||||||| | |||||||||||||  |||| |||||||| |||||    
T  41332758 ttgggttctttaccatctcagacatcgcccataacaatacctctgacgatgtttcggtaccagcaatgaacatatcctacaaatggattaaca 41332666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 41431319 - 41431274
Alignment:
Q  299 gtgattgtttctatgatcattgatgatgtcttgcaatatcctatca 344  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||    
T  41431319 gtgactgtttttatgatcattgatgatgtcttgcaatatcgtatca 41431274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 41328825 - 41328733
Alignment:
Q  2 ttgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaatggaataaca 94  Q
    |||||||||| | |||||| ||||||||||||| || ||    ||||||||||||| | ||||||| ||||| ||||| |||||||| |||||    
T  41328825 ttgggttcttcaccatctcagacatcgcccataacagaacctgtgacgatgtttcggtaccagcaaggaacatgtcctacaaatggattaaca 41328733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 31178052 - 31178107
Alignment:
Q  2 ttgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcg 57  Q
    ||||||||||||||||||| || ||| |||||| ||||| |||||| |||||||||    
T  31178052 ttgggttctttatcatctcagatatcccccataacacaactcctgatgatgtttcg 31178107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 41286320 - 41286280
Alignment:
Q  401 tttaatagaaggatacaaatcagcaatacaaaattctccca 441  Q
    |||||||||||||||||||||| |||| |||||| ||||||    
T  41286320 tttaatagaaggatacaaatcaacaatgcaaaatcctccca 41286280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 182 - 442
Target Start/End: Original strand, 17249076 - 17249336
Alignment:
Q  182 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 281  Q
    ||||||||| |||| |||||||||||| ||||||||||| |  | ||||| || | || |||| ||||||| ||||| |||| |||||||||| ||||||    
T  17249076 actaacctggatgattgattttatattgtcatcagtcaatgaattttgtgggtaatcactttcttgttgaatcttgataagagcatcaactagatcttca 17249175  T
Q  282 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactc 381  Q
    ||||||| || |||  | ||    ||||| |||||||  ||||| |||||||||||| ||||||| || |  || | | | || | | |||| |||||      
T  17249176 tccttgcgtgctttgttttgtccatttctgtgatcatctatgatatcttgcaatatcatatcaatttccctatgaagtttttccattttggttttcacct 17249275  T
Q  382 tacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaa 442  Q
     ||||||| ||| ||||||||| |||||||||||||||||| ||||||||||| |||||||    
T  17249276 gacttacccttttaagtattttgatagaaggatacaaatcaacaatacaaaatcctcccaa 17249336  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 17248932 - 17249014
Alignment:
Q  2 ttgggttctttatcatctccgacatcgcccatagcacaattcctgacgatgtttcgctgccagcaatgaacaagtcctgcaaa 84  Q
    ||||||| ||||| ||||| |||||  |||||| |||||| || |||||||||||||| ||||||   |||| ||||||||||    
T  17248932 ttgggttttttattatctcagacattccccataacacaatcccagacgatgtttcgctaccagcagcaaacatgtcctgcaaa 17249014  T

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