View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_low_13 (Length: 465)
Name: NF16803_low_13
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 13 - 465
Target Start/End: Original strand, 32169486 - 32169940
Alignment:
| Q |
13 |
gaaacaagctttacaattataccctctcttctccaattcgtaacttccctcatggcattctcagcgaagacgggtcctctctctctccctcactttctga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32169486 |
gaaacaagctttacaattataccctctcttctccaattcgtaacttccctcatggcattctcagcgaagacgggtcctctctctctccctcactttctga |
32169585 |
T |
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| Q |
113 |
tctgatatgatatcgttattattcatcgattcaagtatagaaacatttatgtaggattatttagggactagaatcaattggttcttaatcaagaattaag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32169586 |
tctgatatgatatcgttattattcatcgattcaagtatagaaacatttatgtaggattatttaaggactagaatcaattggttcttaatcaagaattaag |
32169685 |
T |
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| Q |
213 |
gaaaggatttattctctatttaaatgtgattagtttgtagatactgtgctaattatgtggttgtcatataaagtttcatttt--tgtgtgtgtttgtagg |
310 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
32169686 |
gaaaggatttattctccatttaaatgtgattagtttgtagatactgtgctaattatgtggttctcatataaagtttcatttttgtgtgtgtgtttgtagg |
32169785 |
T |
|
| Q |
311 |
ttttacaaagtgtcagtgaaccagaccaccctttggtttcaggttggctccatcaggtcacgcttatttcttttatttctgatgtagtattttttcagct |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32169786 |
ttttacaaagtgtcagtgaaccagaccaccctttggtttcaggttggctccatcaggtcacgcttatttcttttatttctgatgtagtatttttttagct |
32169885 |
T |
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| Q |
411 |
tccaactatgaagcacatatacggacaccgaactcacacagacacgtcacgtcga |
465 |
Q |
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| T |
32169886 |
tccaactatgaagcacatatacggacaccgaactcacacagacacgtcacgtcga |
32169940 |
T |
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