View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16803_low_14 (Length: 435)
Name: NF16803_low_14
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 4255636 - 4255212
Alignment:
| Q |
19 |
acttaaccataacacaatcttctacaattgatgatcctcgttgttcagagcgttgaaaattgtacctttcacttctttctttgattccatgaattgttaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4255636 |
acttaaccataacacaatcttctacaatcgacgatcctcgttgttcagagcgttgaaaattgtacctttcacttctttctttgattccatgaattgttaa |
4255537 |
T |
|
| Q |
119 |
tttgatctcttgaatctcacacgctactcgatgacgaggttttaaggttttccatttcatcaatccaacaacattttgaagtttacctatgaatccatca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
4255536 |
tttgatctcttgaatctcacacgctactcgatgacgaggttttaaggttttccatttcatcaatccaacaacattatgaagtttgcctatgaatccatca |
4255437 |
T |
|
| Q |
219 |
tgatgat---------ggtgatgagccacatccatgatgtatgcatcaatgacatcttctatgtgaaaagataattctcttaactgtttcacccaaattt |
309 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4255436 |
tgatgatcatgatgatggtgatgagccacatccatgatgtatgcatcaatgacatcttctatgtgaaaagataattctcttaactgtttcacccaaattt |
4255337 |
T |
|
| Q |
310 |
gaatgcttacttcatccgaagtggctcttttatcagcatcttttaagaaagcgcgaatgaactctagttcattcttaacgtcttcaaagtctctacggac |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4255336 |
gaatgcttacttcatccgaagtggctcttttatcagcatcttttaagaaagcgcgaacgaattctagttcattcttaacgtcttcaaagtctctacggac |
4255237 |
T |
|
| Q |
410 |
atgttttagtaatcttgtttcatct |
434 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4255236 |
atgttttagtaatcttgtttcatct |
4255212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 3221871 - 3221922
Alignment:
| Q |
254 |
atcaatgacatcttctatgtgaaaagataattctcttaactgtttcacccaa |
305 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| ||| ||||||||| |
|
|
| T |
3221871 |
atcaatcacatcttctatgtgaaaagatgcttctcttagctgcttcacccaa |
3221922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 3200680 - 3200628
Alignment:
| Q |
253 |
catcaatgacatcttctatgtgaaaagataattctcttaactgtttcacccaa |
305 |
Q |
| |
|
||||||| |||||||||||| |||||||| |||||||| ||| ||||||||| |
|
|
| T |
3200680 |
catcaatcacatcttctatgcgaaaagatgcttctcttagctgcttcacccaa |
3200628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 3357768 - 3357820
Alignment:
| Q |
253 |
catcaatgacatcttctatgtgaaaagataattctcttaactgtttcacccaa |
305 |
Q |
| |
|
||||||| |||||||||||| |||||||| |||||||| ||| ||||||||| |
|
|
| T |
3357768 |
catcaatcacatcttctatgcgaaaagatgcttctcttagctgcttcacccaa |
3357820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 22358773 - 22358801
Alignment:
| Q |
253 |
catcaatgacatcttctatgtgaaaagat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
22358773 |
catcaatgacatcttctatgtgaaaagat |
22358801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 22368677 - 22368705
Alignment:
| Q |
253 |
catcaatgacatcttctatgtgaaaagat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
22368677 |
catcaatgacatcttctatgtgaaaagat |
22368705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 22431916 - 22431944
Alignment:
| Q |
253 |
catcaatgacatcttctatgtgaaaagat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
22431916 |
catcaatgacatcttctatgtgaaaagat |
22431944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University