View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_low_19 (Length: 398)
Name: NF16803_low_19
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 26464228 - 26463847
Alignment:
| Q |
1 |
tgtaagtcaaacatcatttcaaccagtacagccagttaaacctgattataactcacaatttggtttatcaacttctgaaagagtaaccttgccgtatcat |
100 |
Q |
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| T |
26464228 |
tgtaagtcaaacatcatttcaaccagtacagccagttaaacctgattataactcacaatttggtttatcaacttctgaaagagtaacctcgccgtatcat |
26464129 |
T |
|
| Q |
101 |
aatcctttcttgcctgctgtggctgtgggaagtaataaaagcctacactcctctgtgttatctgtgggtgtttcagagcatcctgttgctattcctttgc |
200 |
Q |
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| T |
26464128 |
aatcctttcttgcctgctgtggctgtgggaagtaataaaagcctacactcctctgggttatctgtgggtgtttcagagtatcctgttgctattcctttgc |
26464029 |
T |
|
| Q |
201 |
aatttcctgtaatggtaaatgaagccaatggtcagcataattaccaagtcctggagagaagtcaagttcacaacccttttttaacattaccgatgctatc |
300 |
Q |
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| T |
26464028 |
aatttcctgtaatggtaaatgaagcaaatggtcagcataactaccaagtcccggagagaagtcaagttcacaacccttttttaacattaccgatgctatc |
26463929 |
T |
|
| Q |
301 |
ttatggttggcttcgacatggaagtgtcattgcttcagagggagaaagcatcttgaaatcaactccatgcccaccaatactg |
382 |
Q |
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| T |
26463928 |
ttatggttggcttcgacatggaagtgtcattgcttcagagggagaaagcatcttgatatcaactccatgcccacaaatactg |
26463847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 3630741 - 3630822
Alignment:
| Q |
164 |
gtgggtgtttcagagcatcctgttgctattcctttgcaatttcctgtaatggtaaatgaagccaatggtcagcataattacc |
245 |
Q |
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| T |
3630741 |
gtgggtgtttctgggcatccagttgctttaccttttcagtttcctctcatggttaatgaagcaaatggtcagtataattacc |
3630822 |
T |
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