View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_low_20 (Length: 370)
Name: NF16803_low_20
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 32 - 363
Target Start/End: Complemental strand, 3048805 - 3048474
Alignment:
| Q |
32 |
ctgtcatctactcctcatattataaaacgatggaagtagaaactttcattgtgtgtgatatgcttctccccaatgtgccacgatccacaacaagcaatgt |
131 |
Q |
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| T |
3048805 |
ctgtcatctactcctcatattataaaacgatggaagtagaaactttcattgtgtgtgatatgcttctccccaatgtgccacgatccacaacaaggaatgt |
3048706 |
T |
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| Q |
132 |
tacggatgttacgaaaacataaataaaattctctatactatataagcaatgctatggatcttatgaaaacataaatataattatatactataattcaatc |
231 |
Q |
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| T |
3048705 |
tacggatgttacgaaaacataaataaaattctctatactatataagcaatgctatggatcttatgaaaacataaataaaattatacactataattcaatc |
3048606 |
T |
|
| Q |
232 |
tggtcaatttattcgcaaataaaaggaaaaacacaaggaatgaggtccaaacataaagtgtataataannnnnnnnacaagacataaagtgtagaataat |
331 |
Q |
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| T |
3048605 |
tggtcaatttattcgcaaataaaaggaaaaacacaaggaatgaggtccaaacataaagtgtataataattttttttacaagacataaagtgtagaataat |
3048506 |
T |
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| Q |
332 |
aaacatgctactcagcaagagaataatctacc |
363 |
Q |
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| T |
3048505 |
aaacatgctactcaacaagagaataatctacc |
3048474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 34609420 - 34609361
Alignment:
| Q |
71 |
aaactttcattgtgtgtgatatgcttctccccaatgtgccacgatccacaacaagcaatg |
130 |
Q |
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| T |
34609420 |
aaactttcatggtgcatgatacgcttctccccaatgtgccacaatccacaacaagcaatg |
34609361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 33465429 - 33465488
Alignment:
| Q |
71 |
aaactttcattgtgtgtgatatgcttctccccaatgtgccacgatccacaacaagcaatg |
130 |
Q |
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| T |
33465429 |
aaactttcattgtgcatgatatgcttctcttctatgtgccacaatccacaacaagcaatg |
33465488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 34606326 - 34606267
Alignment:
| Q |
71 |
aaactttcattgtgtgtgatatgcttctccccaatgtgccacgatccacaacaagcaatg |
130 |
Q |
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| T |
34606326 |
aaactttcatggtgcatgatatgcttctcctcaatgtgccacaatccacgacaagaaatg |
34606267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 33465633 - 33465679
Alignment:
| Q |
317 |
aaagtgtagaataataaacatgctactcagcaagagaataatctacc |
363 |
Q |
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| T |
33465633 |
aaagtgtagaataataagcatgctactcaaaaagagtataatctacc |
33465679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 30858486 - 30858531
Alignment:
| Q |
91 |
atgcttctccccaatgtgccacgatccacaacaagcaatgttacgg |
136 |
Q |
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| T |
30858486 |
atgcttctctccaatgtgcaacgatccacaataagcaatgttacgg |
30858531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 38866317 - 38866376
Alignment:
| Q |
225 |
ttcaatctggtcaatttattcgcaaataaaaggaaaaacacaaggaatgaggtccaaaca |
284 |
Q |
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|||||||| |||| |||||||||||| ||||||||| |||||| ||| ||||||||||| |
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| T |
38866317 |
ttcaatcttgtcagtttattcgcaaacaaaaggaaagacacaaagaacaaggtccaaaca |
38866376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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