View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_low_22 (Length: 359)
Name: NF16803_low_22
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 13023491 - 13023717
Alignment:
| Q |
1 |
caaggcggatatcacgtgatacatcatcataataataaatcatgaacttattgaaataatataactcata-ttttttaacttcactctttattagccaaa |
99 |
Q |
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| T |
13023491 |
caaggcgaatatcacgtgatacatcat---aataataaatcatgaacttattgaaataatataactcataattttttaacttcactctttattagccaaa |
13023587 |
T |
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| Q |
100 |
ttcattaattaataagtaataaaattgaggtaaaaatatactttgtagattcggttatctaaagtgaacaactaactgtaaactaaatattatcaatcat |
199 |
Q |
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| T |
13023588 |
ttcattaattaataagtaataaaattgaggtaaaaatatactttgtagattcggttatctaaagtgaacaactaactgtaaactaaatattatcaatcat |
13023687 |
T |
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| Q |
200 |
tgattaaattattaggataaatactaaaca |
229 |
Q |
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| T |
13023688 |
tgattaaattattaggataaatactaaaca |
13023717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 243 - 345
Target Start/End: Original strand, 13023704 - 13023807
Alignment:
| Q |
243 |
ataaatactaaacatatatcataataaattatgaatttgttgaaataacaatgtttac-tttttacctttatattttactcactttagatgaacgacatt |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13023704 |
ataaatactaaacatatatcataataaattatgaatttgttgaaataacaatgtttacttttttacctttatattttactcactttagatgaacgacatt |
13023803 |
T |
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| Q |
342 |
catg |
345 |
Q |
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|||| |
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| T |
13023804 |
catg |
13023807 |
T |
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