View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16803_low_25 (Length: 348)

Name: NF16803_low_25
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16803_low_25
NF16803_low_25
[»] chr1 (2 HSPs)
chr1 (21-332)||(34064300-34064602)
chr1 (246-289)||(49901340-49901383)
[»] chr4 (1 HSPs)
chr4 (241-298)||(24831094-24831151)
[»] chr3 (1 HSPs)
chr3 (264-293)||(93420-93449)
[»] chr8 (1 HSPs)
chr8 (241-293)||(30805959-30806011)
[»] chr2 (1 HSPs)
chr2 (241-293)||(13293792-13293844)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 332
Target Start/End: Original strand, 34064300 - 34064602
Alignment:
Q  21 gtatcaatagtatacctattggtatatccttacccaccttcccatatgaaccagcaccactaggtggtggaactaggtggaactactccaccacattgtc 120  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||          |||||||||||||||||||||    
T  34064300 gtatcaatagtatacctattggtatatccttacccactttcccatatgaaccagcaccactatgtggtg----------gaactactccaccacattgtc 34064389  T
Q  121 ggaaactctggatatgtttcccagccaccccaatagtcccaacaaccaatagcagtggatgtccctaatgatcatccggatctttaatggtggaggcaga 220  Q
    ||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34064390 ggaaactctggatttttttcccagccaccccaatagccccaacaaccaatagcagtggatgtccctaatgatcatcaggatctttaatggtggaggcaga 34064489  T
Q  221 tcaagaggtgtatctcta-gagtaaattagtaacctacatttatttgattatctacactcatttttataaatttgattatcatttaatgtcgttatatgt 319  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34064490 tcaagaagtgtatctctaggagtaaattagtaacctacattcatttgattatctacaatcatttttataaatttgattatcatttaatgtcgttatatgt 34064589  T
Q  320 atagattgagtat 332  Q
    |||||||||||||    
T  34064590 atagattgagtat 34064602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 49901340 - 49901383
Alignment:
Q  246 ttagtaacctacatttatttgattatctacactcatttttataa 289  Q
    |||| |||||||||| |||||||||| |||||||||||||||||    
T  49901340 ttagcaacctacattcatttgattatttacactcatttttataa 49901383  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 24831151 - 24831094
Alignment:
Q  241 gtaaattagtaacctacatttatttgattatctacactcatttttataaatttgatta 298  Q
    |||| |||| |||||||||  | |||||||| ||||||||||||||||||||||||||    
T  24831151 gtaagttagcaacctacatccacttgattatatacactcatttttataaatttgatta 24831094  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Original strand, 93420 - 93449
Alignment:
Q  264 ttgattatctacactcatttttataaattt 293  Q
    ||||||||||||||||||||||||||||||    
T  93420 ttgattatctacactcatttttataaattt 93449  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 30805959 - 30806011
Alignment:
Q  241 gtaaattagtaacctacatttatttgattatctacactcatttttataaattt 293  Q
    |||| |||| |||||||||  | |||||||| |||||||||||||||||||||    
T  30805959 gtaagttagcaacctacatccacttgattatttacactcatttttataaattt 30806011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 13293792 - 13293844
Alignment:
Q  241 gtaaattagtaacctacatttatttgattatctacactcatttttataaattt 293  Q
    |||| |||| |||||||||| | |||||||| ||||||| |||||||||||||    
T  13293792 gtaagttagcaacctacattcacttgattatttacactcttttttataaattt 13293844  T

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