View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_low_28 (Length: 339)
Name: NF16803_low_28
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 1160021 - 1160344
Alignment:
| Q |
1 |
cctaaacagaagcaactaaacatgatacttaattagctgtggaagtaaaacaacatgattaaagcaaaaaactcaaacataaaataaatgttgggacaca |
100 |
Q |
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| T |
1160021 |
cctaaacagaagcaactaaacatgatacttaattag---tggaagtaaaacaacatgattaaagcaaaaaactcaaacataaaataaatgttgggacaca |
1160117 |
T |
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| Q |
101 |
aacatgaaggtgtttgtgttcataattgtgcccgtgattggcgactgcaccaccaaccactccaccagcaactccaccagccactgcaccgccgataatt |
200 |
Q |
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| T |
1160118 |
aacatgaaggtgtttgtgtccataattgtgcccgtgattggcgactgcaccaccaaccactccaccagcaactccaccagccactgcaccgccgataatt |
1160217 |
T |
|
| Q |
201 |
cctgcagctgctccacctgaccttcctctaccaattcctcttcctcccattccacttccatggccacctgaacctccatg------tcctcctcctccct |
294 |
Q |
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| T |
1160218 |
cctgcagctgctccacctgaccttcctctaccaattcctcttcctcccattccacttccatggccacctgaacctccatgtcctcctcctcctcctccct |
1160317 |
T |
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| Q |
295 |
ttcttatagtaacagatagttcatgtt |
321 |
Q |
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| T |
1160318 |
ttcttatagtaacagatagttcatgtt |
1160344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 1141671 - 1141737
Alignment:
| Q |
39 |
gtggaagtaaaacaacatgattaaagcaaaaaactcaaacataaaataaatgttgggacacaaacat |
105 |
Q |
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| T |
1141671 |
gtggaagtgaaacaatatgattataaccaaaagctcaaacataaaataaatgttgagacacaaacat |
1141737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 1137017 - 1137083
Alignment:
| Q |
39 |
gtggaagtaaaacaacatgattaaagcaaaaaactcaaacataaaataaatgttgggacacaaacat |
105 |
Q |
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| T |
1137017 |
gtggaagtgaaacaatgtaattaaagccaaaagctcaaacataaaagaaatgttgagacacaaacat |
1137083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 321
Target Start/End: Original strand, 1141865 - 1141902
Alignment:
| Q |
284 |
tcctcctccctttcttatagtaacagatagttcatgtt |
321 |
Q |
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| T |
1141865 |
tcctcctccttttcttatggtaacagatagttcatgtt |
1141902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 1172323 - 1172356
Alignment:
| Q |
288 |
cctccctttcttatagtaacagatagttcatgtt |
321 |
Q |
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| T |
1172323 |
cctccctttcttatagtaagagatagttcatgtt |
1172356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 1137266 - 1137302
Alignment:
| Q |
285 |
cctcctccctttcttatagtaacagatagttcatgtt |
321 |
Q |
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|||||||| |||||||| ||||||||||||||||||| |
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| T |
1137266 |
cctcctccttttcttatggtaacagatagttcatgtt |
1137302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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