View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16803_low_29 (Length: 336)
Name: NF16803_low_29
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 51786431 - 51786212
Alignment:
| Q |
12 |
gagcagagacatgaagtggaccctttgctgggcctaaagttcggtccgaaaatgagactatttacttagcgggagatgacacctaaagtgattttatggt |
111 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| |||||| |||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51786431 |
gagcagaggcatgaagtggaccctttgttggacctaaaattcggttcgaaaatgagactacttacttagcaggagatgacacctaaagtgattttatggt |
51786332 |
T |
|
| Q |
112 |
attaacaatgaacatctcatcaatgcatgtatacttannnnnnngaatggttgctctttaatttggcccatattttccctttattcttaaaaataacatt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51786331 |
attaacaatgaacatctcatcaatgcatgtatacttatttttttgaatggtttctctttaatttggcccatattttccctttattcttaaaaataacatt |
51786232 |
T |
|
| Q |
212 |
tgaaagttaatttctgaaac |
231 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
51786231 |
tgagagttaatttctgaaac |
51786212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 51786173 - 51786122
Alignment:
| Q |
267 |
cgttcaagagttatctctcccaaacaattaacacattttttgaggccaaaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51786173 |
cgttcaagagttatctctcccaaacaattaacacattttttgaggccaaaag |
51786122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University