View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16803_low_3 (Length: 608)

Name: NF16803_low_3
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16803_low_3
NF16803_low_3
[»] chr6 (4 HSPs)
chr6 (3-601)||(15911732-15912321)
chr6 (134-177)||(2189544-2189587)
chr6 (7-49)||(1767129-1767171)
chr6 (142-215)||(15117081-15117157)
[»] scaffold0690 (1 HSPs)
scaffold0690 (225-601)||(8-373)
[»] chr5 (8 HSPs)
chr5 (7-215)||(8488110-8488324)
chr5 (7-190)||(35014174-35014357)
chr5 (131-186)||(25942470-25942525)
chr5 (130-177)||(42289289-42289336)
chr5 (7-44)||(31706427-31706464)
chr5 (13-66)||(32252185-32252238)
chr5 (130-170)||(8006956-8006996)
chr5 (7-43)||(16518390-16518426)
[»] chr1 (6 HSPs)
chr1 (7-190)||(42476375-42476558)
chr1 (5-52)||(2653717-2653764)
chr1 (131-177)||(17128674-17128720)
chr1 (507-560)||(9243911-9243964)
chr1 (7-52)||(52251401-52251446)
chr1 (504-560)||(9336201-9336257)
[»] chr3 (4 HSPs)
chr3 (7-187)||(27302407-27302587)
chr3 (91-190)||(33575113-33575212)
chr3 (7-52)||(21408123-21408168)
chr3 (134-177)||(3694597-3694640)
[»] chr7 (4 HSPs)
chr7 (29-215)||(10061770-10061962)
chr7 (142-186)||(9628388-9628432)
chr7 (132-185)||(24904946-24904999)
chr7 (7-44)||(9628259-9628296)
[»] chr4 (8 HSPs)
chr4 (63-190)||(26961227-26961354)
chr4 (7-52)||(8814060-8814105)
chr4 (142-186)||(13608814-13608858)
chr4 (142-186)||(22495221-22495265)
chr4 (5-52)||(45637488-45637535)
chr4 (11-49)||(26169239-26169277)
chr4 (7-44)||(13608950-13608987)
chr4 (15-52)||(37207389-37207426)
[»] chr2 (3 HSPs)
chr2 (7-75)||(36178924-36178992)
chr2 (7-44)||(27009258-27009295)
chr2 (7-44)||(31640299-31640336)
[»] chr8 (1 HSPs)
chr8 (9-186)||(43776280-43776457)
[»] scaffold0225 (1 HSPs)
scaffold0225 (21-67)||(6579-6625)


Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 3 - 601
Target Start/End: Complemental strand, 15912321 - 15911732
Alignment:
Q  3 tttattcccctcaattaccatggttggtggctaagtccgttttctattctcggagtaggctaattgtctttatttctttcttcgcttcttggtggttggt 102  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15912321 tttattgccctcaattatcatggttggtggctaagtccgttttctattctcggagtaggctaattgtctttatttctttcttcgcttcttggtggttggc 15912222  T
Q  103 ttttgccttgtaaatattgtgacgaattctgtttgtatattggtgtttcttctttagcacaacttgtgctaggaatgccatttttgttttatattgcatt 202  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15912221 ttttgccttgtaaatattgtgacgaattctgtttgtattttgatgtttcttctttagcacaacttgtgctaggaaggccatttttgttttatattgcatt 15912122  T
Q  203 ttagcctcttcaatnnnnnnnnctgcacaaatgaattttggttaccacatcttcactaaaaacctcaatacataagttatgcatcttccactttatatgt 302  Q
    ||||||||||||||        ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15912121 ttagcctcttcaataaaaaaa-ctgcacaaatggattttggttaccacatcttcactaaaaacctcaatacataagttatgcgtcttccactttatatgt 15912023  T
Q  303 tgttcaatatcaatttttatttaatatgaaactttaatcgacacccgaagcactataacaaattctgccgagattattctcgtctaaggtcaaagtcatc 402  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||           ||| |||||||||||||||    
T  15912022 tgttcaatatcaatttttatttaatatgaaactttaatcgacactcgaagcactataacaaattctgccg-----------gtccaaggtcaaagtcatc 15911934  T
Q  403 acaatattgaattggacttggaagttttcattcatacat---taccgttttaaattaataattctcttgagattattctcacactagagataatacaaaa 499  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15911933 acaatattgaattggacttggaagttttcattcatacataattaccgttttaaattaataattctcttgagattattctcacactagagataatacaaaa 15911834  T
Q  500 tagaaaactgtctttctcaaggtcaaagtcatcatagcattgacttagactttgaagttttccttcatactttaccattttaaattaataatattcatat 599  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15911833 tagaaaactgtctttcttaaggtcaaagtcatcatagcattgacttggactttgaagttttccttcatactttaccattttaaattaataatattcatat 15911734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 2189587 - 2189544
Alignment:
Q  134 tttgtatattggtgtttcttctttagcacaacttgtgctaggaa 177  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||    
T  2189587 tttgtattttggtgtttcttccttagcacaccttgtgctaggaa 2189544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 1767129 - 1767171
Alignment:
Q  7 ttcccctcaattaccatggttggtggctaagtccgttttctat 49  Q
    |||| |||||||||||||||||||||| |||||||||| ||||    
T  1767129 ttcctctcaattaccatggttggtggcaaagtccgtttactat 1767171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 15117157 - 15117081
Alignment:
Q  142 ttggtgtttcttctttagcacaacttgtgctaggaatgccatttttgttt---tatattgcattttagcctcttcaa 215  Q
    ||||||||||||| |||||||| || |||||||||| |||| | |||| |   |||||| |||||||||||||||||    
T  15117157 ttggtgtttcttccttagcacacctagtgctaggaaggccaatgttgtgttaatatatttcattttagcctcttcaa 15117081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 225 - 601
Target Start/End: Original strand, 8 - 373
Alignment:
Q  225 ctgcacaaatgaattttggttaccacatcttcactaaaaacctcaatacataagttatgcatcttccactttatatgttgttcaatatcaatttttattt 324  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8 ctgcacaaatggattttggttaccacatcttcactaaaaacctcaatacataagttatgcgtcttccactttatatgttgttcaatatcaatttttattt 107  T
Q  325 aatatgaaactttaatcgacacccgaagcactataacaaattctgccgagattattctcgtctaaggtcaaagtcatcacaatattgaattggacttgga 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||           ||| |||||||||||||||||||||||||||||||||||||    
T  108 aatatgaaactttaatcgacacccgaagcactataacaaattctgccg-----------gtccaaggtcaaagtcatcacaatattgaattggacttgga 196  T
Q  425 agttttcattcatacattaccgttttaaattaataattctcttgagattattctcacactagagataatacaaaatagaaaactgtctttctcaaggtca 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  197 agttttcattcatacattaccgttttaaattaataattctcttgagattattctcacactagagataatacaaaatagaaaactgtctttcttaaggtca 296  T
Q  525 aagtcatcatagcattgacttagactttgaagttttccttcatactttaccattttaaattaataatattcatatca 601  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  297 aagtcatcatagcattgacttggactttgaagttttccttcatactttaccattttaaattaataatattcatatca 373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 8488110 - 8488324
Alignment:
Q  7 ttcccctcaattaccatggttggtggctaagtccgttttctattctcggagtaggctaattgtctttatttctttcttcgcttcttggtggttggttttt 106  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || ||| |||||||||||||||||    
T  8488110 ttcccctcaattatcatggttggtggctaagtccgttttctattctcggaatagggtaattgtctttatttctttttttgctgcttggtggttggttttt 8488209  T
Q  107 gccttgtaaatattgtgacgaattctgtttgtatattggtgtttcttctttagcacaacttgtgctaggaatgccatttttgtt------ttatattgca 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||       |||||||||    
T  8488210 gccttgtaaatattgtgacgaattctgtttgtattttggtgtttcttctttagcacaacttgtgctaggaaggccatttttgttgtggtaatatattgca 8488309  T
Q  201 ttttagcctcttcaa 215  Q
    |||||||||||||||    
T  8488310 ttttagcctcttcaa 8488324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 35014174 - 35014357
Alignment:
Q  7 ttcccctcaattaccatggttggtggctaagtccgttttctattctcggagtaggctaattgtctttatttctttcttcgcttcttggtggttggttttt 106  Q
    |||| |||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||| ||||    
T  35014174 ttcctctcaattatcatggttggtggctaggtctgttttctattctcggagtagactaattgtctttatttctttcttcgctgctaggtggttggctttt 35014273  T
Q  107 gccttgtaaatattgtgacgaattctgtttgtatattggtgtttcttctttagcacaacttgtgctaggaatgccatttttgtt 190  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||  |||||||||||    
T  35014274 gccttgtaaatattgtgacgaattctgtttgtattttgttgtttcttctttagcacaacttatgctaggaagaccatttttgtt 35014357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 25942525 - 25942470
Alignment:
Q  131 ctgtttgtatattggtgtttcttctttagcacaacttgtgctaggaatgccatttt 186  Q
    ||||||| || |||||||| ||||||||||||||||||||||||||| ||||||||    
T  25942525 ctgtttggattttggtgttacttctttagcacaacttgtgctaggaaggccatttt 25942470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 42289289 - 42289336
Alignment:
Q  130 tctgtttgtatattggtgtttcttctttagcacaacttgtgctaggaa 177  Q
    |||||||||||  |||||||||||| |||||||| |||||||||||||    
T  42289289 tctgtttgtattatggtgtttcttccttagcacaccttgtgctaggaa 42289336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 31706464 - 31706427
Alignment:
Q  7 ttcccctcaattaccatggttggtggctaagtccgttt 44  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  31706464 ttcccctcaattaccatgggtggtggcttagtccgttt 31706427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 32252185 - 32252238
Alignment:
Q  13 tcaattaccatggttggtggctaagtccgttttctattctcggagtaggctaat 66  Q
    ||||||| |||||||||||||| ||||||||| | ||||||||  |||||||||    
T  32252185 tcaattatcatggttggtggcttagtccgtttaccattctcggtataggctaat 32252238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 8006956 - 8006996
Alignment:
Q  130 tctgtttgtatattggtgtttcttctttagcacaacttgtg 170  Q
    ||||||||||| ||||||||||||| |||||||| ||||||    
T  8006956 tctgtttgtattttggtgtttcttccttagcacaccttgtg 8006996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 16518426 - 16518390
Alignment:
Q  7 ttcccctcaattaccatggttggtggctaagtccgtt 43  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  16518426 ttcccctcaattaccatggttagtggcttagtccgtt 16518390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 42476375 - 42476558
Alignment:
Q  7 ttcccctcaattaccatggttggtggctaagtccgttttctattctcggagtaggctaattgtctttatttctttcttcgcttcttggtggttggttttt 106  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||    
T  42476375 ttcccctcaattatcatggttggtggctaagtccgttttctattctcggagtaggctaattgtctttatttctttcttcgctgcttggtgtttggctttt 42476474  T
Q  107 gccttgtaaatattgtgacgaattctgtttgtatattggtgtttcttctttagcacaacttgtgctaggaatgccatttttgtt 190  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  42476475 gccttgtaaatattgtgaagaattctgtttgtattttggtgtttcttctttagcacaacttatgctaggaaggccatttttgtt 42476558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 2653764 - 2653717
Alignment:
Q  5 tattcccctcaattaccatggttggtggctaagtccgttttctattct 52  Q
    ||||||||||||||| |||||||||||||| || ||||||||||||||    
T  2653764 tattcccctcaattaacatggttggtggcttagcccgttttctattct 2653717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 17128674 - 17128720
Alignment:
Q  131 ctgtttgtatattggtgtttcttctttagcacaacttgtgctaggaa 177  Q
    ||||||| || ||||||||||||| |||||||| |||||||||||||    
T  17128674 ctgtttggattttggtgtttcttccttagcacatcttgtgctaggaa 17128720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 560
Target Start/End: Complemental strand, 9243964 - 9243911
Alignment:
Q  507 ctgtctttctcaaggtcaaagtcatcatagcattgacttagactttgaagtttt 560  Q
    |||||||||||| ||||||| |||||||||||||||| | ||||| ||| ||||    
T  9243964 ctgtctttctcagggtcaaactcatcatagcattgacctggacttggaaatttt 9243911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 52251401 - 52251446
Alignment:
Q  7 ttcccctcaattaccatggttggtggctaagtccgttttctattct 52  Q
    |||||||||| || |||||||||||||| |||||||| ||||||||    
T  52251401 ttcccctcaactatcatggttggtggcttagtccgttctctattct 52251446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 560
Target Start/End: Original strand, 9336201 - 9336257
Alignment:
Q  504 aaactgtctttctcaaggtcaaagtcatcatagcattgacttagactttgaagtttt 560  Q
    ||||||||||||| | |||||||||||| ||||||||||| | ||||| ||| ||||    
T  9336201 aaactgtctttctaagggtcaaagtcattatagcattgacctggacttggaaatttt 9336257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 1e-61; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 27302407 - 27302587
Alignment:
Q  7 ttcccctcaattaccatggttggtggctaagtccgttttctattctcggagtaggctaattgtctttatttctttcttcgcttcttggtggttggttttt 106  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| | |||||||||||| ||||    
T  27302407 ttcccctcaattatcatggttggtggctaagtctgttttctattctcggaataggctaattgtctttatttcttttttcgttccttggtggttggctttt 27302506  T
Q  107 gccttgtaaatattgtgacgaattctgtttgtatattggtgtttcttctttagcacaacttgtgctaggaatgccattttt 187  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||| |||||| ||||||  ||||||||    
T  27302507 gccttgtaaatattgagacgaattctgtttgtattttggtgtttcttttttagtacatcttgtgttaggaagaccattttt 27302587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 91 - 190
Target Start/End: Complemental strand, 33575212 - 33575113
Alignment:
Q  91 ttggtggttggtttttgccttgtaaatattgtgacgaattctgtttgtatattggtgtttcttctttagcacaacttgtgctaggaatgccatttttgtt 190  Q
    |||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| ||| ||| ||||||||||||    
T  33575212 ttggaggttggtttttgccttataaatattgtgacgaattatgtttgtattttggtgttttttctttagcacaacttgtactaagaaggccatttttgtt 33575113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 21408168 - 21408123
Alignment:
Q  7 ttcccctcaattaccatggttggtggctaagtccgttttctattct 52  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  21408168 ttcccctcaattaccatggttggtggcttagtccgttttctattct 21408123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 3694640 - 3694597
Alignment:
Q  134 tttgtatattggtgtttcttctttagcacaacttgtgctaggaa 177  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||    
T  3694640 tttgtattttggtgtttcttccttagcacaccttgtgctaggaa 3694597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 10061962 - 10061770
Alignment:
Q  29 gtggctaagtccgttttctattctcggagtaggctaattgtctttatttctttcttcgcttcttggtggttggtttttgccttgtaaatattgtgacgaa 128  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||  | ||    
T  10061962 gtggctaagtccgttttctattctcggagtaggctaattatctttatttctttcttcgctttttggtggttgacttttgccttgtaaatattgttgcaaa 10061863  T
Q  129 ttctgtttgtatattggtgtttcttctttagcacaacttgtgctaggaatgccatttttgtt------ttatattgcattttagcctcttcaa 215  Q
    |||||||||||| |||||||||||||||||||||||||||||  | |||  |||||||||||       ||||||||||||||||||||||||    
T  10061862 ttctgtttgtattttggtgtttcttctttagcacaacttgtgtcaagaagaccatttttgttgtgataatatattgcattttagcctcttcaa 10061770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 9628388 - 9628432
Alignment:
Q  142 ttggtgtttcttctttagcacaacttgtgctaggaatgccatttt 186  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  9628388 ttggtgtttcttctttagcacaacttgtgctaggaaggccttttt 9628432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 24904999 - 24904946
Alignment:
Q  132 tgtttgtatattggtgtttcttctttagcacaacttgtgctaggaatgccattt 185  Q
    ||||||||  ||||||||||||| |||||||| ||||||||||||| |||||||    
T  24904999 tgtttgtactttggtgtttcttccttagcacaccttgtgctaggaaggccattt 24904946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 9628259 - 9628296
Alignment:
Q  7 ttcccctcaattaccatggttggtggctaagtccgttt 44  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  9628259 ttcccttcaattaccatggttggtggcttagtccgttt 9628296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 6e-54; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 63 - 190
Target Start/End: Original strand, 26961227 - 26961354
Alignment:
Q  63 taattgtctttatttctttcttcgcttcttggtggttggtttttgccttgtaaatattgtgacgaattctgtttgtatattggtgtttcttctttagcac 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26961227 taattgtctttatttctttctttgctgcttggtggttggtttttgccttgtaaatattgtgacgaattctgtttgtattttggtgtttcttctttagcac 26961326  T
Q  163 aacttgtgctaggaatgccatttttgtt 190  Q
    |||||||||||||||  |||||||||||    
T  26961327 aacttgtgctaggaagaccatttttgtt 26961354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 8814060 - 8814105
Alignment:
Q  7 ttcccctcaattaccatggttggtggctaagtccgttttctattct 52  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  8814060 ttcccctcaattaccatggttggtggcttagtccgttttctattct 8814105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 13608858 - 13608814
Alignment:
Q  142 ttggtgtttcttctttagcacaacttgtgctaggaatgccatttt 186  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  13608858 ttggtgtttcttctttagcacaacttgtgctaggaaggccttttt 13608814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 22495265 - 22495221
Alignment:
Q  142 ttggtgtttcttctttagcacaacttgtgctaggaatgccatttt 186  Q
    ||||||||||||||||||||||||||||||||||||  |||||||    
T  22495265 ttggtgtttcttctttagcacaacttgtgctaggaagaccatttt 22495221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 45637488 - 45637535
Alignment:
Q  5 tattcccctcaattaccatggttggtggctaagtccgttttctattct 52  Q
    ||||||||||||||| |||||||||||||| || ||||||||||||||    
T  45637488 tattcccctcaattaacatggttggtggcttagcccgttttctattct 45637535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 26169277 - 26169239
Alignment:
Q  11 cctcaattaccatggttggtggctaagtccgttttctat 49  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  26169277 cctcaattaccatggttgctggctaagtccgtttactat 26169239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 13608987 - 13608950
Alignment:
Q  7 ttcccctcaattaccatggttggtggctaagtccgttt 44  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  13608987 ttcccttcaattaccatggttggtggcttagtccgttt 13608950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 37207426 - 37207389
Alignment:
Q  15 aattaccatggttggtggctaagtccgttttctattct 52  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  37207426 aattatcatggttgatggctaagtccgttttctattct 37207389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 36178924 - 36178992
Alignment:
Q  7 ttcccctcaattaccatggttggtggctaagtccgttttctattctcggagtaggctaattgtctttat 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   | |||||||||| |||||    
T  36178924 ttcccctcaattaccatggttggtggctaagtccgttttctattctcgacatcggctaattgtttttat 36178992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 27009258 - 27009295
Alignment:
Q  7 ttcccctcaattaccatggttggtggctaagtccgttt 44  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  27009258 ttcccttcaattaccatggttggtggcttagtccgttt 27009295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 31640299 - 31640336
Alignment:
Q  7 ttcccctcaattaccatggttggtggctaagtccgttt 44  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  31640299 ttcccctcaattaccatggatggtggcttagtccgttt 31640336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 43776280 - 43776457
Alignment:
Q  9 cccctcaattaccatggttggtggctaagtccgttttctattctcggagtaggctaattgtctttatttctttcttcgc--ttcttggtggttggttttt 106  Q
    ||||||||||| ||||||||||||||  ||||||||||||  || ||  ||| |||||||| ||| ||||||| |  |   || |||||||||||||  |    
T  43776280 cccctcaattatcatggttggtggctttgtccgttttctacccttggcatagactaattgtttttctttctttttgggtgttttttggtggttggttcgt 43776379  T
Q  107 gccttgtaaatattgtgacgaattctgtttgtatattggtgtttcttctttagcacaacttgtgctaggaatgccatttt 186  Q
    |||||||||||| |||  |||||  | ||||| || |||||||||||| |||| ||| ||||||||||||| ||||||||    
T  43776380 gccttgtaaataatgttccgaataat-tttgttta-tggtgtttcttccttagtacaccttgtgctaggaaggccatttt 43776457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 6579 - 6625
Alignment:
Q  21 catggttggtggctaagtccgttttctattctcggagtaggctaatt 67  Q
    |||||||||||||||||||||||| ||||||| ||  ||||||||||    
T  6579 catggttggtggctaagtccgtttgctattctaggcataggctaatt 6625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University