View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_low_30 (Length: 333)
Name: NF16803_low_30
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 42598431 - 42598255
Alignment:
| Q |
13 |
ataattctcgagatcatgaacattcatgaaatgcccnnnnnnnnnnnnggggggtaaaattaagaaaaaataatatttttacaaggaactaatttaaaga |
112 |
Q |
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| T |
42598431 |
ataattctcgagatcatgaacattcatgaaatgcc--ttttttttttgggggggtaaaattaagaaaaaataatatttttacaaggaactaatttaaaga |
42598334 |
T |
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| Q |
113 |
agaagnnnnnnncatacccttgaacatttctgagggtttggttgaatcgagaatcaaggattcctatggtactagtgtc |
191 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42598333 |
agaaaaaaaaaacatacccttgaacatttctgagggtttggttgaatcgagaatcaaggattcctatggtactagtgtc |
42598255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 42598173 - 42598140
Alignment:
| Q |
278 |
agtgatgagtgagtagcagtgaatgagtgcagca |
311 |
Q |
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| T |
42598173 |
agtgatgagtgagtagcagtgaatgagtgcagca |
42598140 |
T |
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