View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16803_low_34 (Length: 317)

Name: NF16803_low_34
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16803_low_34
NF16803_low_34
[»] chr1 (3 HSPs)
chr1 (15-281)||(10042105-10042371)
chr1 (198-252)||(3523388-3523441)
chr1 (254-291)||(23902722-23902759)
[»] chr5 (7 HSPs)
chr5 (201-252)||(18542219-18542270)
chr5 (202-252)||(12976661-12976711)
chr5 (202-252)||(13049988-13050038)
chr5 (192-252)||(9895138-9895197)
chr5 (208-244)||(28735829-28735865)
chr5 (202-246)||(30271691-30271735)
chr5 (224-252)||(34261663-34261691)
[»] chr4 (7 HSPs)
chr4 (192-252)||(22402374-22402434)
chr4 (208-244)||(7422169-7422205)
chr4 (197-239)||(28373102-28373144)
chr4 (197-239)||(44768335-44768377)
chr4 (197-250)||(9018880-9018933)
chr4 (202-246)||(20742370-20742414)
chr4 (198-250)||(33904744-33904796)
[»] chr6 (6 HSPs)
chr6 (197-252)||(8013846-8013901)
chr6 (197-243)||(29236254-29236300)
chr6 (212-252)||(29236675-29236715)
chr6 (200-243)||(26493531-26493574)
chr6 (209-247)||(10338617-10338655)
chr6 (209-254)||(4070382-4070427)
[»] chr3 (4 HSPs)
chr3 (202-252)||(36895362-36895412)
chr3 (199-244)||(31702685-31702730)
chr3 (270-298)||(4216013-4216041)
chr3 (197-241)||(28887384-28887428)
[»] chr8 (5 HSPs)
chr8 (197-249)||(11556955-11557007)
chr8 (203-246)||(28131221-28131264)
chr8 (198-243)||(28478065-28478110)
chr8 (192-252)||(30629370-30629430)
chr8 (198-250)||(35956161-35956213)
[»] chr2 (2 HSPs)
chr2 (198-243)||(22556235-22556280)
chr2 (221-249)||(5047022-5047050)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 10042105 - 10042371
Alignment:
Q  15 ctttttataactcaagtgtcgcaccggatatataaagcactgacacaaacaccggacacactctgacacgttgatagatattactgattattagggaaaa 114  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  10042105 ctttttataactcaagtgtcgcaccggatatacaaagcactgacacagacaccggacacactctgacacattgatagatattacttattattagggaaaa 10042204  T
Q  115 tggaagtaattgaatgtaactgcatttgtgtgttcgtgtccttgtgtcggacaatggacacatcttagacatgcgattgacgtgtagacaccagtaataa 214  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10042205 tggaagtaattgaatgtaactgcatttgtgttttcgtgtccttgtgtcggacaatggacacatcttagacatgcgactgacgtgtagacaccagtaataa 10042304  T
Q  215 tttgtgaaaatagaagtgattgaatgtaatcacatgtgctggacactgaacacaactttaatctgaa 281  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  10042305 tttgtgaaaatagaagtgattgaatgtaaccacatgtgctgaacactgaacacaactttaatctgaa 10042371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 3523388 - 3523441
Alignment:
Q  198 gtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 252  Q
    |||||||||  ||||||||||  ||||||||||||||||||||||| ||||||||    
T  3523388 gtagacaccgataataatttgataaaatagaagtgattgaatgtaa-cacatgtg 3523441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 23902759 - 23902722
Alignment:
Q  254 tggacactgaacacaactttaatctgaagtgtcagtgc 291  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  23902759 tggacactgaacacatcttcaatctgaagtgtcagtgc 23902722  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 18542270 - 18542219
Alignment:
Q  201 gacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 252  Q
    |||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  18542270 gacaccagtaataatttgagaaaatacaagtaattgaatgtaatcacatgtg 18542219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 12976711 - 12976661
Alignment:
Q  202 acaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 252  Q
    ||||||||||||||||  ||||||| |||| | ||||||||||||||||||    
T  12976711 acaccagtaataatttaagaaaataaaagtcaatgaatgtaatcacatgtg 12976661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 13050038 - 13049988
Alignment:
Q  202 acaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 252  Q
    ||||||||||||||||  ||||||| |||| | ||||||||||||||||||    
T  13050038 acaccagtaataatttaagaaaataaaagtcaatgaatgtaatcacatgtg 13049988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 9895138 - 9895197
Alignment:
Q  192 tgacgtgtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 252  Q
    |||||||| |||||||||||||||||| ||||||| || |  ||||| |||||||||||||    
T  9895138 tgacgtgtggacaccagtaataatttgagaaaata-aattatttgaacgtaatcacatgtg 9895197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 28735865 - 28735829
Alignment:
Q  208 gtaataatttgtgaaaatagaagtgattgaatgtaat 244  Q
    ||||||||||  |||||||||||||||||||||||||    
T  28735865 gtaataatttaagaaaatagaagtgattgaatgtaat 28735829  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 30271691 - 30271735
Alignment:
Q  202 acaccagtaataatttgtgaaaatagaagtgattgaatgtaatca 246  Q
    ||||||||||| ||||  ||| |||||||||||||||||||||||    
T  30271691 acaccagtaatgatttaagaatatagaagtgattgaatgtaatca 30271735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 252
Target Start/End: Complemental strand, 34261691 - 34261663
Alignment:
Q  224 atagaagtgattgaatgtaatcacatgtg 252  Q
    |||||||||||||||||||||||||||||    
T  34261691 atagaagtgattgaatgtaatcacatgtg 34261663  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 22402374 - 22402434
Alignment:
Q  192 tgacgtgtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 252  Q
    |||| |||||| ||| ||||||| ||| |||||||||||||||||||||||| ||||||||    
T  22402374 tgacatgtagagaccggtaataaattgagaaaatagaagtgattgaatgtaaccacatgtg 22402434  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 7422169 - 7422205
Alignment:
Q  208 gtaataatttgtgaaaatagaagtgattgaatgtaat 244  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7422169 gtaataatttgagaaaatagaagtgattgaatgtaat 7422205  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 28373102 - 28373144
Alignment:
Q  197 tgtagacaccagtaataatttgtgaaaatagaagtgattgaat 239  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||    
T  28373102 tgtagacaccaataatactttgagaaaatagaagtgattgaat 28373144  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 44768377 - 44768335
Alignment:
Q  197 tgtagacaccagtaataatttgtgaaaatagaagtgattgaat 239  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||    
T  44768377 tgtagacaccaataatactttgagaaaatagaagtgattgaat 44768335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 9018933 - 9018880
Alignment:
Q  197 tgtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatg 250  Q
    |||||||||||||| ||||||| ||||||  |||| ||||||||||| ||||||    
T  9018933 tgtagacaccagtagtaatttgagaaaatgaaagtaattgaatgtaaccacatg 9018880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 20742370 - 20742414
Alignment:
Q  202 acaccagtaataatttgtgaaaatagaagtgattgaatgtaatca 246  Q
    ||||||||||||||||| ||||||  |||| ||||||||||||||    
T  20742370 acaccagtaataatttgagaaaatgcaagtaattgaatgtaatca 20742414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 33904796 - 33904744
Alignment:
Q  198 gtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatg 250  Q
    ||||||||||| ||||||||| ||||||| |||| ||||||||| | ||||||    
T  33904796 gtagacaccagaaataatttgcgaaaataaaagtaattgaatgtgaccacatg 33904744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 8013901 - 8013846
Alignment:
Q  197 tgtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 252  Q
    ||||||||| ||||||||||||  |||||| |||||||||||||||| ||||||||    
T  8013901 tgtagacactagtaataatttgaaaaaatataagtgattgaatgtaaccacatgtg 8013846  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 29236254 - 29236300
Alignment:
Q  197 tgtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaa 243  Q
    ||||||||| | |||||||||| ||||||||||||||||||||||||    
T  29236254 tgtagacactaataataatttgagaaaatagaagtgattgaatgtaa 29236300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 29236675 - 29236715
Alignment:
Q  212 taatttgtgaaaatagaagtgattgaatgtaatcacatgtg 252  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  29236675 taatttgagaaaatagaagtgattgaatgtaatcacttgtg 29236715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 26493574 - 26493531
Alignment:
Q  200 agacaccagtaataatttgtgaaaatagaagtgattgaatgtaa 243  Q
    |||||| ||||| |||||| ||||||||||||||||||||||||    
T  26493574 agacactagtaacaatttgagaaaatagaagtgattgaatgtaa 26493531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 10338617 - 10338655
Alignment:
Q  209 taataatttgtgaaaatagaagtgattgaatgtaatcac 247  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  10338617 taataatttaagaaaatagaagtgattgaatgtaatcac 10338655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 4070382 - 4070427
Alignment:
Q  209 taataatttgtgaaaatagaagtgattgaatgtaatcacatgtgct 254  Q
    |||||||||| ||||  ||||||||||||||||||| |||||||||    
T  4070382 taataatttgagaaataagaagtgattgaatgtaattacatgtgct 4070427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 36895362 - 36895412
Alignment:
Q  202 acaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 252  Q
    ||||| |||||||||||  |||||| |||||||||||||||||||||||||    
T  36895362 acacctgtaataatttgataaaatataagtgattgaatgtaatcacatgtg 36895412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 31702685 - 31702730
Alignment:
Q  199 tagacaccagtaataatttgtgaaaatagaagtgattgaatgtaat 244  Q
    ||||||||| |||||||||  |||||||| ||||||||||||||||    
T  31702685 tagacaccaataataatttaagaaaatagtagtgattgaatgtaat 31702730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 298
Target Start/End: Complemental strand, 4216041 - 4216013
Alignment:
Q  270 ctttaatctgaagtgtcagtgctgcattg 298  Q
    |||||||||||||||||||||||||||||    
T  4216041 ctttaatctgaagtgtcagtgctgcattg 4216013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 28887384 - 28887428
Alignment:
Q  197 tgtagacaccagtaataatttgtgaaaatagaagtgattgaatgt 241  Q
    ||||||||||| |||||||||  |||||||||| |||||||||||    
T  28887384 tgtagacaccaataataatttaagaaaatagaattgattgaatgt 28887428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 11557007 - 11556955
Alignment:
Q  197 tgtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacat 249  Q
    |||||||||| ||||||||||| ||||||  |||||||||||||||| |||||    
T  11557007 tgtagacacctgtaataatttgagaaaatttaagtgattgaatgtaaccacat 11556955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 28131264 - 28131221
Alignment:
Q  203 caccagtaataatttgtgaaaatagaagtgattgaatgtaatca 246  Q
    ||||||||||||| || ||||||||||||||||| |||||||||    
T  28131264 caccagtaataatgtgagaaaatagaagtgattgtatgtaatca 28131221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 28478110 - 28478065
Alignment:
Q  198 gtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaa 243  Q
    ||||||||| ||||||||||   |||||||||||||||||||||||    
T  28478110 gtagacacccgtaataatttaaaaaaatagaagtgattgaatgtaa 28478065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 30629370 - 30629430
Alignment:
Q  192 tgacgtgtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatgtg 252  Q
    |||| |||||||||| |||||| ||| | |||||  |||||||||||||||| ||||||||    
T  30629370 tgacatgtagacaccggtaatactttataaaaatgaaagtgattgaatgtaaacacatgtg 30629430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 35956213 - 35956161
Alignment:
Q  198 gtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaatcacatg 250  Q
    ||||||||||| ||||||||| ||||||| |||| ||||||||| | ||||||    
T  35956213 gtagacaccagaaataatttgcgaaaataaaagtaattgaatgtgaccacatg 35956161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 22556235 - 22556280
Alignment:
Q  198 gtagacaccagtaataatttgtgaaaatagaagtgattgaatgtaa 243  Q
    ||||||||  ||||||||||  ||||||||||||||||||||||||    
T  22556235 gtagacacaggtaataatttaagaaaatagaagtgattgaatgtaa 22556280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 249
Target Start/End: Complemental strand, 5047050 - 5047022
Alignment:
Q  221 aaaatagaagtgattgaatgtaatcacat 249  Q
    |||||||||||||||||||||||||||||    
T  5047050 aaaatagaagtgattgaatgtaatcacat 5047022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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