View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_low_35 (Length: 315)
Name: NF16803_low_35
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 23 - 297
Target Start/End: Complemental strand, 27985445 - 27985171
Alignment:
| Q |
23 |
tagcaacgtaaacatatattctattgataggttctgttaggaacctaacccagctaaattcatttctaatcttaactaaaaagtaactcaaatttagaaa |
122 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27985445 |
tagcaacgtaaaaatatattctattgataggttcctaacagaacctaacccagctaaattcatttctaatcttaactaaaaagtaactcaaatttagaaa |
27985346 |
T |
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| Q |
123 |
aactgccacttgtttatatactgaagccaacattctgaaactttacttttctaccaaaccttcttccagccgccagttctttcatatagtcctgtcctag |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27985345 |
aactgccacttgtttatatactgaagccaacattctgaaactttacttttctaccaaaccttcttccagccgccagttctttcatatagtcctgtcctag |
27985246 |
T |
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| Q |
223 |
aggggacttgtggagaaacagcatctgaagcaccggccaagcgcagaaacacactagctcttttatacgttgcac |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27985245 |
aggggacttgtggagaaacagcatctgaagcaccggccaagcgcagaaacacactagctcttttatacattgcac |
27985171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 23 - 297
Target Start/End: Complemental strand, 28071975 - 28071701
Alignment:
| Q |
23 |
tagcaacgtaaacatatattctattgataggttctgttaggaacctaacccagctaaattcatttctaatcttaactaaaaagtaactcaaatttagaaa |
122 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28071975 |
tagcaacgtaaaaatatattctattgataggttcctaacagaacctaacccagctaaattcatttctaatcttaactaaaaagtaactcaaatttagaaa |
28071876 |
T |
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| Q |
123 |
aactgccacttgtttatatactgaagccaacattctgaaactttacttttctaccaaaccttcttccagccgccagttctttcatatagtcctgtcctag |
222 |
Q |
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| T |
28071875 |
aactgccacttgtttatatactgaagccaacattctgaaactttacttttctaccaaaccttcttccagccgccagttctttcatatagtcctgtcctag |
28071776 |
T |
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| Q |
223 |
aggggacttgtggagaaacagcatctgaagcaccggccaagcgcagaaacacactagctcttttatacgttgcac |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28071775 |
aggggacttgtggagaaacagcatctgaagcaccggccaagcgcagaaacacactagctcttttatacattgcac |
28071701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 152 - 294
Target Start/End: Original strand, 26415620 - 26415762
Alignment:
| Q |
152 |
acattctgaaactttacttttctaccaaaccttcttccagccgccagttctttcatatagtcctgtcctagaggggacttgtggagaaacagcatctgaa |
251 |
Q |
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||||||||||| | ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
26415620 |
acattctgaaaatatacttttctaccaaaccttcttcaggccgccagttcttacatatagtcctgtcatagaggggacctgtggagaaacagcatctgaa |
26415719 |
T |
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| Q |
252 |
gcaccggccaagcgcagaaacacactagctcttttatacgttg |
294 |
Q |
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| T |
26415720 |
gcaccggttaagcgcagaaacacactagctcttttatacgttg |
26415762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 26415454 - 26415569
Alignment:
| Q |
30 |
gtaaacatatattctattgataggttctgttaggaacctaacccagctaaattcatttctaatcttaactaaaaagtaactcaaatttagaaaaactgcc |
129 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| | |||||| |
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| T |
26415454 |
gtaaacatatattccattgataggttcctaacagaacctaacccagctaaattcatttctaat---------aaagtaactgaaattt---ataactgct |
26415541 |
T |
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| Q |
130 |
acttgtttatatactgaagccaacattc |
157 |
Q |
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|||||||||||||||||||||| ||||| |
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| T |
26415542 |
acttgtttatatactgaagccagcattc |
26415569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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