View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_low_37 (Length: 298)
Name: NF16803_low_37
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 53180443 - 53180661
Alignment:
| Q |
1 |
caagaagaacaagggttcttccaaatcaaccaaatccaaaatgaaatcgcaggcgttctgagctccggcgctgttgaatgcaacctcctgagctgatgtt |
100 |
Q |
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| T |
53180443 |
caagaagaacaagggttcttccaaatcaacaaaatc------ggaatcgcaggcgttctaggctctggcaccgttgaatgcaacctcttgggctgatgtt |
53180536 |
T |
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| Q |
101 |
gatgacgatggcgatgattattagtttaatagtagtagagctagaggctttggatttgtcatcttttcaaatgaagatgctgtaaaaaatgcgatggatg |
200 |
Q |
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| T |
53180537 |
gatgacgatgacgatgattattagtttaatagtggtagagttagaggctttggatttgtcatcttttcaaatgaagatgctgcaaaagatgcgatggatg |
53180636 |
T |
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| Q |
201 |
gaaaggttgcacattaaaaattggg |
225 |
Q |
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| T |
53180637 |
gaaaggttgcacattaaaaattggg |
53180661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 49958515 - 49958393
Alignment:
| Q |
1 |
caagaagaacaagggttcttccaaatcaaccaaatccaaaatgaaatcgcaggcgttctgagctccggcgctgttgaatgcaacctcctgagctgatgtt |
100 |
Q |
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| T |
49958515 |
caagaagaataagggttcctccaaatcaaccaaatcggaatcggaatcgcaggcgttttgggctccggcaccgttgaatgcgacctcatgggctgatgtc |
49958416 |
T |
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| Q |
101 |
gatgacgatggcgatgattatta |
123 |
Q |
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| T |
49958415 |
gatgacgacgatgatgattatta |
49958393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 36254621 - 36254679
Alignment:
| Q |
129 |
atagtagtagagctagaggctttggatttgtcatcttttcaaatgaagatgctgtaaaa |
187 |
Q |
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| T |
36254621 |
atagtggtagagctagaggctttggatttgttatcttttcaaatgaagatgctgcaaaa |
36254679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 49949184 - 49949062
Alignment:
| Q |
1 |
caagaagaacaagggttcttccaaatcaaccaaatccaaaatgaaatcgcaggcgttctgagctccggcgctgttgaatgcaacctcctgagctgatgtt |
100 |
Q |
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| T |
49949184 |
caagaagaataagggttcctcaaaatcaaccaaatcggaatcggaatcgcaggcgttttgggctccggcaccgttgaatgcgacctcatgggctgatgtc |
49949085 |
T |
|
| Q |
101 |
gatgacgatggcgatgattatta |
123 |
Q |
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| T |
49949084 |
gatgacgacgatgatgattatta |
49949062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 36261313 - 36261348
Alignment:
| Q |
144 |
gaggctttggatttgtcatcttttcaaatgaagatg |
179 |
Q |
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| T |
36261313 |
gaggctttggatttgttatcttttcaaatgaagatg |
36261348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 32518898 - 32518739
Alignment:
| Q |
1 |
caagaagaacaagggttcttccaaatcaaccaaatccaaaatgaaatcgcaggcgttctgagctccggcgctgttgaatgcaacctcctgagctgatgtt |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||| |||||||| | ||||| ||||||||||| ||||||||| |
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| T |
32518898 |
caagaagaacaacggttcttccaaatcaactaaatcggaatcgaaatcgcaggcgttctgggctccggcaccgttgagtgcaacctcctaggctgatgtt |
32518799 |
T |
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| Q |
101 |
gatgacgatggcgatgattattagtttaatagtagtagagctagaggctttggatttgtcatcttt |
166 |
Q |
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| T |
32518798 |
gatgac------gatgattattagtttaatagtggtagagctagaggctttgaatttgtcatcttt |
32518739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 32518728 - 32518692
Alignment:
| Q |
189 |
atgcgatggatggaaaggttgcacattaaaaattggg |
225 |
Q |
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|||||||||||||||| ||||||||||||| |||||| |
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| T |
32518728 |
atgcgatggatggaaatgttgcacattaaagattggg |
32518692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 73 - 225
Target Start/End: Complemental strand, 17356786 - 17356640
Alignment:
| Q |
73 |
gttgaatgcaacctcctgagctgatgttgatgacgatggcgatgattattagtttaatagtagtagagctagaggctttggatttgtcatcttttcaaat |
172 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||| |
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| T |
17356786 |
gttgaatgcaaccccctgggctgatgttgatgacgatg------attattagtttaatagtggtagagctagaggctttggatttctcatcttttctaat |
17356693 |
T |
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| Q |
173 |
gaagatgctgtaaaaaatgcgatggatggaaaggttgcacattaaaaattggg |
225 |
Q |
| |
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|||||||||| |||| |||| |||||||||||| ||| ||||| ||||||||| |
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| T |
17356692 |
gaagatgctgcaaaagatgccatggatggaaagattggacatttaaaattggg |
17356640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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