View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16803_low_42 (Length: 279)
Name: NF16803_low_42
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_low_42 |
 | |
|
| [»] scaffold0063 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 1738952 - 1739197
Alignment:
| Q |
19 |
ttcataaataaatcatacctatacctcgcctcatcggcaataattattaagctcttgcatataaaattctcacaaactacttgattgtacctagatacta |
118 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
1738952 |
ttcataaataaatcatacttgtacctcgcctcatcgacaataattattaagctcttgcatataaaattctcactaactatttgataatacctagatacta |
1739051 |
T |
|
| Q |
119 |
taatctcatcatcatacatatgtattcataagagtatgaataacaaagtttatctctaatggagaacttgatcatcaacacaaccctttacattaaggta |
218 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1739052 |
taatctcatcattatacatatgtattcataagagtatgaataacaaagtttatatctacaagagaacttgaccatcaacacaaccctttacattaaggta |
1739151 |
T |
|
| Q |
219 |
ttctcatcatttaattatctgtgcgtattgcaaaagtccacccgag |
264 |
Q |
| |
|
|| |||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
1739152 |
ttatcatcatttagttatatgtgcgtattgcaaaagtccacccgag |
1739197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 66367 - 66608
Alignment:
| Q |
19 |
ttcataaataaatcatacctatacctcgcctcatcggcaataattattaagctcttgcatataaaattctcacaaactacttgattgtacctagatacta |
118 |
Q |
| |
|
|||||||||||||||||| ||||| || || | || ||||||| ||| ||| || ||||||||||||||| || ||| || ||| || ||||| |||| |
|
|
| T |
66367 |
ttcataaataaatcatacttatacttcaccgcttctgcaataaatat-aagttcctgcatataaaattcttactaacactttaattatatctagacacta |
66465 |
T |
|
| Q |
119 |
taatctcatcatcatacatatgtattcataagagtatgaataacaaagtttatctctaatggagaacttgatcatcaacacaaccctttacattaaggta |
218 |
Q |
| |
|
|||| ||| ||| ||||||| ||||||| | |||||||||| |||||||||||||| | ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
66466 |
taatatcaccattatacatacatattcattaaagtatgaatagtaaagtttatctctactaaagaacttgatcatcaacacaacccttttcattaaggta |
66565 |
T |
|
| Q |
219 |
ttctcatcatttaattatctgtgcgtattgcaaaagtccaccc |
261 |
Q |
| |
|
||| ||||||||| |||| |||| ||||||||||||||||||| |
|
|
| T |
66566 |
ttcacatcatttacttatatgtgtgtattgcaaaagtccaccc |
66608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 18353879 - 18353830
Alignment:
| Q |
17 |
agttcataaataaatcatacctatacctcgcctcatcggcaataattatt |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18353879 |
agttcataaataaatcatacctatacctcgcctcatcggcaataattatt |
18353830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University