View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_low_52 (Length: 253)
Name: NF16803_low_52
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_low_52 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 38192622 - 38192867
Alignment:
| Q |
17 |
aaatacaaatagatattttagagaataatgaaaattaattctgaaagataac-aaaattttcgttgctgattaaatataaatatacacgcagctataaat |
115 |
Q |
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| T |
38192622 |
aaatacaaatagatattttagagaataatgaaaattaattctgaaagataactaaaatattcgttgttgattaaatataaatatacacgcagctataaat |
38192721 |
T |
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| Q |
116 |
gaagcatgtatgtatatatttaattagaaacattatga--------attaattggattcgactaattcatgaatgatgtgaaatatacgacgattaatgg |
207 |
Q |
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| T |
38192722 |
gaagcatgtatgtttatatttaattagaaacattatgaatattttgattaattctattcgactaattcatgaatgatgtgaaatataggacgattaatgg |
38192821 |
T |
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| Q |
208 |
catacaatgcaaaagagagaatcagagaaaatgtgatatgaaaaaa |
253 |
Q |
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| T |
38192822 |
catacaatgcaaaagagagaatcagagaaaatgtgatatgaaaaaa |
38192867 |
T |
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