View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16803_low_6 (Length: 555)
Name: NF16803_low_6
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_low_6 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 54 - 555
Target Start/End: Complemental strand, 1806105 - 1805605
Alignment:
| Q |
54 |
tacaaaatacatttcagcgttgtttatttataacgaacacattttcacgaatcacttgtgaataaatttacccttgcatgaagaagtgcgcagcattatt |
153 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1806105 |
tacaaaatacatttcagcgttgtt-atttatagcaaacacattttcacgaatcacttgtgaataaatttacccttgtatgaagaagtgcgcagcattatt |
1806007 |
T |
|
| Q |
154 |
cacccatactgaaaggtagtgggaatgaggccaactgctacatgaattactcagaatcgctgtttcaacgttaagccaatatctttctctatttctggtt |
253 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1806006 |
cacccataatgaaaggtagtgggaatgaggccaactgctacatgaattactcagaatcgctgtttcaacgttaagccaatatctttctctatttctggtt |
1805907 |
T |
|
| Q |
254 |
ggtgtccaacttaattttactcaacatataaagaggggcatcttagttctaaaaagtaattcacttttcttttaccttcaattgtgcattataaattatc |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1805906 |
ggtgtccaacttaattttactcaacatataaagaggggcatcttagttctaaaaagtaaatcacttttcttttaccttcaattgtgcattataaattatc |
1805807 |
T |
|
| Q |
354 |
agaatgctagtgtactcatcaatacatcaaacttcaaattacatttttctcacactcacctgttacaaactttaaattacatttttcatgcactcaccta |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1805806 |
agaatgctagtgtactcatcaatacatcaaacttcaaattacatttttctcacactcacctgttacaaactttaaattacatttttcatgcactcgccta |
1805707 |
T |
|
| Q |
454 |
ttaatcaatttgaaaaagaatggttacagaattttgcagtgaaaacattcaaactcgtgcaagggtttgactgccatgtttgaaataacaacttacgggc |
553 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1805706 |
ttaatcaatttgaaaaagaatggttacaaaattttgcagtgaaaacattcaaactcgtgcaagggtttgactgccatgtttgaaataacaacttacgggc |
1805607 |
T |
|
| Q |
554 |
ac |
555 |
Q |
| |
|
|| |
|
|
| T |
1805606 |
ac |
1805605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University