View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16803_low_60 (Length: 244)

Name: NF16803_low_60
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16803_low_60
NF16803_low_60
[»] chr1 (16 HSPs)
chr1 (13-244)||(25591970-25592202)
chr1 (70-242)||(10722509-10722679)
chr1 (70-242)||(9903763-9903935)
chr1 (71-242)||(10711611-10711773)
chr1 (70-242)||(40292583-40292754)
chr1 (71-242)||(49968797-49968969)
chr1 (70-242)||(30111422-30111594)
chr1 (70-242)||(17707466-17707638)
chr1 (70-242)||(41061642-41061815)
chr1 (70-138)||(1395036-1395104)
chr1 (70-150)||(47107254-47107335)
chr1 (89-242)||(41181702-41181852)
chr1 (70-242)||(47586790-47586964)
chr1 (70-143)||(12173675-12173749)
chr1 (171-242)||(47107178-47107249)
chr1 (71-142)||(21335822-21335894)
[»] scaffold0007 (1 HSPs)
scaffold0007 (71-244)||(181600-181773)
[»] chr4 (19 HSPs)
chr4 (71-244)||(31863737-31863910)
chr4 (71-244)||(34005365-34005538)
chr4 (78-242)||(18107054-18107218)
chr4 (70-242)||(42777709-42777880)
chr4 (70-242)||(30274310-30274483)
chr4 (80-242)||(53487451-53487613)
chr4 (70-218)||(19164456-19164604)
chr4 (70-242)||(12881183-12881356)
chr4 (78-242)||(449529-449693)
chr4 (78-242)||(34322817-34322981)
chr4 (70-242)||(52741336-52741507)
chr4 (71-242)||(42822915-42823086)
chr4 (78-242)||(1844755-1844921)
chr4 (70-242)||(29213478-29213652)
chr4 (94-242)||(20395092-20395238)
chr4 (125-242)||(55854319-55854436)
chr4 (98-242)||(53779543-53779687)
chr4 (70-242)||(10563807-10563979)
chr4 (89-242)||(18935155-18935310)
[»] chr3 (17 HSPs)
chr3 (71-244)||(8695387-8695560)
chr3 (71-244)||(9047274-9047447)
chr3 (70-242)||(11639436-11639608)
chr3 (70-242)||(33121815-33121987)
chr3 (78-242)||(36634916-36635080)
chr3 (70-242)||(32093412-32093583)
chr3 (78-242)||(19221606-19221769)
chr3 (71-242)||(25341832-25342004)
chr3 (70-242)||(26845340-26845513)
chr3 (78-242)||(47536747-47536910)
chr3 (173-240)||(50543794-50543861)
chr3 (88-149)||(32233670-32233731)
chr3 (71-143)||(1764603-1764675)
chr3 (78-242)||(24124339-24124506)
chr3 (71-143)||(49500930-49501003)
chr3 (70-143)||(43122275-43122349)
chr3 (70-143)||(46664947-46665021)
[»] chr6 (7 HSPs)
chr6 (70-242)||(17079689-17079861)
chr6 (93-242)||(9199750-9199898)
chr6 (71-183)||(6831488-6831600)
chr6 (77-242)||(11061354-11061518)
chr6 (78-242)||(17874299-17874464)
chr6 (98-242)||(33722551-33722695)
chr6 (78-150)||(26526008-26526080)
[»] chr2 (10 HSPs)
chr2 (78-242)||(3000246-3000410)
chr2 (78-236)||(7075590-7075748)
chr2 (89-213)||(9393026-9393150)
chr2 (78-242)||(24313921-24314086)
chr2 (78-228)||(18704305-18704457)
chr2 (104-242)||(30273503-30273642)
chr2 (134-242)||(1379617-1379724)
chr2 (70-151)||(22295919-22296001)
chr2 (71-115)||(1379570-1379614)
chr2 (89-138)||(36272886-36272935)
[»] chr7 (13 HSPs)
chr7 (70-242)||(34231169-34231341)
chr7 (70-242)||(29114047-29114219)
chr7 (78-242)||(18654330-18654496)
chr7 (72-197)||(24752890-24753015)
chr7 (70-242)||(7459169-7459341)
chr7 (78-242)||(4076751-4076917)
chr7 (78-183)||(20047688-20047794)
chr7 (71-178)||(20037562-20037670)
chr7 (71-242)||(46177725-46177897)
chr7 (187-242)||(28060165-28060220)
chr7 (71-143)||(10282419-10282492)
chr7 (70-130)||(23397272-23397332)
chr7 (193-237)||(33796870-33796914)
[»] chr5 (9 HSPs)
chr5 (78-242)||(4416198-4416362)
chr5 (70-242)||(4922704-4922876)
chr5 (71-242)||(20209217-20209389)
chr5 (71-242)||(34874937-34875107)
chr5 (89-242)||(7001263-7001413)
chr5 (70-242)||(40089806-40089981)
chr5 (70-137)||(27895375-27895442)
chr5 (78-242)||(6048714-6048866)
chr5 (89-214)||(8891985-8892107)
[»] chr8 (9 HSPs)
chr8 (71-227)||(10583929-10584084)
chr8 (70-242)||(17658302-17658472)
chr8 (89-242)||(45256326-45256476)
chr8 (71-210)||(8446700-8446839)
chr8 (89-242)||(29470696-29470847)
chr8 (116-242)||(23679681-23679805)
chr8 (77-242)||(26030968-26031134)
chr8 (71-138)||(36156625-36156693)
chr8 (78-175)||(31082172-31082270)
[»] scaffold0308 (1 HSPs)
scaffold0308 (70-242)||(11549-11720)
[»] scaffold0227 (1 HSPs)
scaffold0227 (70-148)||(8380-8458)
[»] scaffold0765 (1 HSPs)
scaffold0765 (71-144)||(1382-1455)
[»] scaffold0481 (1 HSPs)
scaffold0481 (78-183)||(1351-1456)
[»] scaffold0179 (1 HSPs)
scaffold0179 (162-242)||(7090-7170)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 25592202 - 25591970
Alignment:
Q  13 aatattccaaccatgaaaatgcagtaacattaaagaatttaacggagaannnnnnnng-aacaaacaaaaatggaattatattaaccaccaaaagcaact 111  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||           |||||||||||||||||||||||||||||||||||||||||    
T  25592202 aatattccaaccatgaaaatgcagtaacattaaagaatttaagggagatttttttttttaacaaacaaaaatggaattatattaaccaccaaaagcaact 25592103  T
Q  112 cttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaacaaaccatcgcgcgatgcccaaacattgtaagggac 211  Q
    ||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  25592102 cttctagcacaaggtgtgccacaagaactactttacaaatacagagttatacaaccaaccaaaacaaactatcacgcgatgcccaaacattgtaagggac 25592003  T
Q  212 ttgaacaccacctatctgaaccaaacctaaaga 244  Q
    |||||||||||||||||||||||||||||||||    
T  25592002 ttgaacaccacctatctgaaccaaacctaaaga 25591970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 10722509 - 10722679
Alignment:
Q  70 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaa 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||  | | |||||| |||    
T  10722509 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactttacaaatac--agtcatacaaacaa 10722606  T
Q  170 ccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  10722607 ccaaaacaaaccattacgcgatgcccaagcattgtaagggacttgaacaccacctatctgaaccaaacttaaa 10722679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 9903935 - 9903763
Alignment:
Q  70 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaa 169  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||| |||||| ||| | | |||||| |||    
T  9903935 gaacaatcaaaaatggaattatgttaaccaccaaaagcaactcttctagtacaaggtgtgctaaaagaactactctacaaacacagagtcatacaaacaa 9903836  T
Q  170 ccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||||||||||  ||||||||||||  |||||||||||||||| |||||| |||||||||||||||||||    
T  9903835 ccaaaacaaaccattacgcgatgcccaagtattgtaagggacttgagcaccacttatctgaaccaaacctaaa 9903763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 10711773 - 10711611
Alignment:
Q  71 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaac 170  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | | ||||           
T  10711773 aacaatcaaaaatgaaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactttacaaatacagagtcatac------- 10711681  T
Q  171 caaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
      |||||||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10711680 --aaacaaaccattacgcgatacccaagcattgtaagggacttgaacaccacctatctgaaccaaacctaaa 10711611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 40292754 - 40292583
Alignment:
Q  70 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaa 169  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| |||||||| | | | | |||| |||    
T  40292754 gaacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactctacaaataaagagtcaaacaaacaa 40292655  T
Q  170 ccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    || |||||||||||  || |||||||||||||||||||| |||||| |||||| | || ||||||||||||||    
T  40292654 cc-aaacaaaccattacgtgatgcccaaacattgtaaggaacttgagcaccacatctcagaaccaaacctaaa 40292583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 49968797 - 49968969
Alignment:
Q  71 aacaaacaaaaatggaatt-atattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaa 169  Q
    ||||| ||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||| | |||| |||||||||||| ||| | | |||||| |||    
T  49968797 aacaatcaaaaatggaatttatattaaccaccaaaagcaacttctctagcacaaggtgtgctaaaagagctactttacaaacacagagtcatacaaacaa 49968896  T
Q  170 ccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||| || |||||||  |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  49968897 ccataagaaaccattacgcgatgcccaagcattggaagggacttgagcaccacctatctgaaccaaacctaaa 49968969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 30111594 - 30111422
Alignment:
Q  70 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaa 169  Q
    |||||| |||||||||||||||||||| || ||||| |||||||||||| ||||||||||||| ||||||||||||||||  | | | | |||||| |||    
T  30111594 gaacaatcaaaaatggaattatattaatcatcaaaaacaactcttctagcacaaggtgtgccaaaagaactactttacaaccatagagtcatacaaacaa 30111495  T
Q  170 ccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    | ||| ||||||||  | |||| |||||||||||||||||| ||||||||||| ||||| |||||||||||||    
T  30111494 ctaaagcaaaccattacacgatacccaaacattgtaagggatttgaacaccacatatctaaaccaaacctaaa 30111422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 17707466 - 17707638
Alignment:
Q  70 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaa 169  Q
    |||||| |||||| | ||||||||||| ||||| ||||||||||||||| ||||||||||| | |||| ||||| ||||||   | | | |||||| |||    
T  17707466 gaacaatcaaaaaagaaattatattaatcaccacaagcaactcttctagcacaaggtgtgctaaaagagctactctacaaacttagagtcatacaaacaa 17707565  T
Q  170 ccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||||||||||  || ||||||||| ||||||||| |||||||||| ||| |||||||||||||||||||    
T  17707566 ccaaaacaaaccattacgtgatgcccaagcattgtaagagacttgaacaacacatatctgaaccaaacctaaa 17707638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 41061815 - 41061642
Alignment:
Q  70 gaacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaat-tatacaacc 167  Q
    |||||| |||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| | ||||| |||| |||||| ||| | |  | |||| |    
T  41061815 gaacaatcaaaaatggaatatatattaac-accaaaagcaactcttctagcacaaggtgtgctaaaagaattactctacaaaaacatagtcaaaacaaac 41061717  T
Q  168 aaccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    |||||| |||||||||   ||||||||||| ||||| || |||||||| ||||||||||||| ||||||||||||    
T  41061716 aaccaatacaaaccattaagcgatgcccaagcattggaaaggacttgagcaccacctatctgtaccaaacctaaa 41061642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 1395104 - 1395036
Alignment:
Q  70 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaa 138  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||    
T  1395104 gaacaatcaaaaatggaattatattaaccaccaaaaacaactcttctagcacaaggtgtgccaaaagaa 1395036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 47107335 - 47107254
Alignment:
Q  70 gaacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaa 150  Q
    |||||| |||||||| ||| ||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| ||||||    
T  47107335 gaacaatcaaaaatgaaatatatattaactaccaaaagcaactcctctagtacaaggtgtgccaaaagaactactctacaaa 47107254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 242
Target Start/End: Original strand, 41181702 - 41181852
Alignment:
Q  89 tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaacaaaccatcgcgc 188  Q
    |||||||||||||||||||| ||| | ||| |||| | ||| || |||| ||||| |||||| ||| | | |||||| ||| |||||   |||||| ||     
T  41181702 tatattaaccaccaaaagcagctcctatagcacaatgcgtgtcaaaagagctactatacaaacacatagtcatacaaacaaacaaaa---accatcacgt 41181798  T
Q  189 gatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    |||||||||| |||| ||||| ||||| ||||| ||||||||||||||||||||    
T  41181799 gatgcccaaatattggaaggggcttgagcaccatctatctgaaccaaacctaaa 41181852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 47586790 - 47586964
Alignment:
Q  70 gaacaaacaaaaatggaat-tatattaaccaccaaaagc-aactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaacc 167  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||| ||||  ||||||||||||| | ||| ||||||| ||| |   | |    ||| |    
T  47586790 gaacaaacaaaaatggaatatatattaaccaccaaaagcaaactcctctaacacaaggtgtgccaaatgaattactttaaaaacaatgagtcggtcaagc 47586889  T
Q  168 aacca-aaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    | ||| |||||||||||   ||||||||||| ||||| |||||| |||||||||||||||||| ||||||||||||    
T  47586890 acccataaacaaaccattaagcgatgcccaagcattggaaggga-ttgaacaccacctatctgtaccaaacctaaa 47586964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 12173675 - 12173749
Alignment:
Q  70 gaacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactact 143  Q
    ||||||||||||||||||| |||||||||||| |||| |||||| ||||| ||||| ||||||| ||||| ||||    
T  12173675 gaacaaacaaaaatggaatatatattaaccacaaaaaacaactcctctagcacaagatgtgccaaaagaattact 12173749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 47107249 - 47107178
Alignment:
Q  171 caaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    |||||||||||||   ||||||||||| ||||| ||||||| ||| |||||| |||||| |||||| |||||    
T  47107249 caaaacaaaccattaagcgatgcccaagcattgaaagggacgtgagcaccacatatctgtaccaaatctaaa 47107178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 21335894 - 21335822
Alignment:
Q  71 aacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactac 142  Q
    ||||| |||||||||||| |||||||||||| |||| ||| || ||||  ||||| ||||||| |||||||||    
T  21335894 aacaagcaaaaatggaatatatattaaccacaaaaaacaattcctctaagacaagatgtgccaaaagaactac 21335822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 71 - 244
Target Start/End: Original strand, 181600 - 181773
Alignment:
Q  71 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaac 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  181600 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaagaactactttacaaatacaaagttatacaaccaac 181699  T
Q  171 caaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaaga 244  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  181700 caaaacaaaccattacgcgatgcccaaacattgtaagggacttgaacaccacctatttgaaccaaacctaaaga 181773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 71 - 244
Target Start/End: Original strand, 31863737 - 31863910
Alignment:
Q  71 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaac 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  31863737 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaagaactactttacaaatacagagttatacaaccaac 31863836  T
Q  171 caaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaaga 244  Q
    |||||||||||||  |||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  31863837 caaaacaaaccattacgcgatgcccaagcattgtaagggacttgaacaccaactatctgaaccaaacttaaaga 31863910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 71 - 244
Target Start/End: Original strand, 34005365 - 34005538
Alignment:
Q  71 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaac 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | |||||||||||||    
T  34005365 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtataaggtgtgccataagaactactttacaaatacagagttatacaaccaac 34005464  T
Q  171 caaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaaga 244  Q
    |||||||||||||  |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  34005465 caaaacaaaccattacgcgatgctcaagcattgtaagggacttgaacaccacttatctgaaccaaacctaaaga 34005538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 18107218 - 18107054
Alignment:
Q  78 aaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaaca 177  Q
    ||||||||||||||||||| ||||||||||||||||||| | ||||||||||||| |||||||||| |||||||  | | | |||||| |||||||||||    
T  18107218 aaaaatggaattatattaatcaccaaaagcaactcttctggcacaaggtgtgccaaaagaactactctacaaatttagagtcatacaaacaaccaaaaca 18107119  T
Q  178 aaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||  || ||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  18107118 aaccattacgtgatgcccaagcattgtaagggacttgaacaccacatatctgaaccaaacctaaa 18107054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 42777709 - 42777880
Alignment:
Q  70 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaa 169  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||| |||||||| | | | |||||| | |    
T  42777709 gaacaaacaaaaatggaattataataatcaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactctacaaataaagagtcatacaaacca 42777808  T
Q  170 ccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    || |||||||||||  || ||||||||||||||||||||||||||| |||||| | || ||||||||||||||    
T  42777809 cc-aaacaaaccattacgtgatgcccaaacattgtaagggacttgagcaccacatctcagaaccaaacctaaa 42777880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 30274483 - 30274310
Alignment:
Q  70 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatac--aaaattatacaacc 167  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||| | ||| ||||||| |||| ||||| |||||| ||  | | | |||||| |    
T  30274483 gaacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcataagatgtgccaaaagagctactctacaaa-acttagagtcatacaaac 30274385  T
Q  168 aaccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||||||||||||  || ||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  30274384 aaccaaaacaaaccattacgtgatgcccaagcattgtaagggacttgaacaccacatatctgaaccaaacctaaa 30274310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 80 - 242
Target Start/End: Complemental strand, 53487613 - 53487451
Alignment:
Q  80 aaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaacaaa 179  Q
    |||||||||||||| || ||| ||||||||||||||||| ||||| ||||||| ||||| |||| |||||| | | | | |||||| |||||||||||||    
T  53487613 aaatggaattatataaatcacaaaaagcaactcttctagcacaagatgtgccaaaagaattactctacaaacatagagtcatacaaacaaccaaaacaaa 53487514  T
Q  180 ccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||  || |||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  53487513 ccattacgtgatgcccaaatattgtaagggacttgaacaccacatatctgaaccaaacctaaa 53487451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 70 - 218
Target Start/End: Original strand, 19164456 - 19164604
Alignment:
Q  70 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaa 169  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| | | | | |||||| |||    
T  19164456 gaacaatcaaaaatggaattatattaaccaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactctacaaacatagagtcatacaaacaa 19164555  T
Q  170 ccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaaca 218  Q
    ||||| ||||||||  | |||| ||||||||| ||||||||||||||||    
T  19164556 ccaaagcaaaccattacacgatacccaaacatcgtaagggacttgaaca 19164604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 12881356 - 12881183
Alignment:
Q  70 gaacaaacaaaaatggaatt-atattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaacca 168  Q
    |||||| ||| ||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||| |||| ||||| |||||| ||| | | |||||| ||    
T  12881356 gaacaatcaacaatggaatttatattaaccaccaaaagcaactcctctagcacaaggtgtaccaaaagagctactctacaaacacagagtcatacaaaca 12881257  T
Q  169 accaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    | || || |||||||  |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  12881256 aacataaaaaaccattacgcgatgcccaagcattggaagggacttgagcaccacctatctgaaccaaacctaaa 12881183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 449529 - 449693
Alignment:
Q  78 aaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaaca 177  Q
    ||||||||||||||||||| ||| |||||||||||||| || | ||| ||||||| |||| ||||| ||||||   | | | |||||| |||||||||||    
T  449529 aaaaatggaattatattaatcacgaaaagcaactcttccagcataagatgtgccaaaagagctactctacaaacttagagtcatacaaacaaccaaaaca 449628  T
Q  178 aaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||  || ||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  449629 aaccattacgtgatgcccaagcattgtaagggacttgaacaccacatatctgaaccaaacctaaa 449693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 34322981 - 34322817
Alignment:
Q  78 aaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaaca 177  Q
    |||||||||||||||| || |||||||| |||||||||||| ||||||||||||| |||| ||||| ||||||   | | | ||| || |||||||||||    
T  34322981 aaaaatggaattatataaatcaccaaaaacaactcttctagcacaaggtgtgccaaaagagctactctacaaacttagagtcatataaacaaccaaaaca 34322882  T
Q  178 aaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||  || ||||||||| |||||||||||||||||| ||||| |||||||||||||||||||    
T  34322881 aaccattacgtgatgcccaagcattgtaagggacttgaataccacatatctgaaccaaacctaaa 34322817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 52741507 - 52741336
Alignment:
Q  70 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaa 169  Q
    |||||| |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| || ||||| | | | |||||| |||    
T  52741507 gaacaatcaaaaatgaaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactctataaataaagagtcatacaaacaa 52741408  T
Q  170 ccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    || |||||||||||   | ||||||||||||||||||| ||||||| |||||| | || ||||||||||||||    
T  52741407 cc-aaacaaaccattaagtgatgcccaaacattgtaagagacttgagcaccacatctcagaaccaaacctaaa 52741336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 42822915 - 42823086
Alignment:
Q  71 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaac 170  Q
    ||||| ||||||||||||||||| || ||||||||||||||||||||| |||| |||||||| |||| ||||| ||||||   | | | |||||| | |     
T  42822915 aacaatcaaaaatggaattatataaatcaccaaaagcaactcttctagcacaaagtgtgccaaaagagctactctacaaacttagagtcatacaaaccat 42823014  T
Q  171 caaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    |||||||||||||  || ||||||||| |||||||||||| |||||||| || |||||||||||||||||||    
T  42823015 caaaacaaaccattacgtgatgcccaagcattgtaagggatttgaacactacatatctgaaccaaacctaaa 42823086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 1844921 - 1844755
Alignment:
Q  78 aaaaatggaatt-atattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaacca-aaa 175  Q
    |||||||||||| |||||||||| ||||| |||||| ||||| ||||||||||||| |||| ||||| |||||| ||| | | |||||| ||| || |||    
T  1844921 aaaaatggaatttatattaaccatcaaaaacaactcctctagcacaaggtgtgccaaaagagctactctacaaacacagagtcatacaaacaaacataaa 1844822  T
Q  176 caaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
     |||||||  |||||||  ||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  1844821 aaaaccattacgcgatgttcaaacattggaagggacttgagcaccacctatctgaaccaaacctaaa 1844755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 29213652 - 29213478
Alignment:
Q  70 gaacaaacaaaaatggaat-tatattaac-caccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaacc 167  Q
    |||||| |||||||||||| ||||||||  |||||||||||||||| |||||| ||||||||||| || || ||||||||||  | | | | |||||| |    
T  29213652 gaacaatcaaaaatggaatatatattaaaacaccaaaagcaactctcctagtataaggtgtgccaaaataattactttacaagaagagagtcatacaaac 29213553  T
Q  168 aaccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||||||||||||   || |||| ||| ||||| ||||||||||| ||||||||||||| ||||||||||||    
T  29213552 aaccaaaacaaaccattaagcaatgctcaagcattggaagggacttgagcaccacctatctgtaccaaacctaaa 29213478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 94 - 242
Target Start/End: Original strand, 20395092 - 20395238
Alignment:
Q  94 taaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaacaaaccatcgcgcgatgc 193  Q
    ||||||||||||||| ||| | |||||||||||||| || |||| ||||| |||||| ||| | | |||||| ||| |||||  ||||||| |||||||     
T  20395092 taaccaccaaaagcagctcctgtagtacaaggtgtgtcaaaagagctactctacaaacacagagtcatacaaacaaacaaaa--aaccatcacgcgatgt 20395189  T
Q  194 ccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  20395190 ccaagcattggaagggacttgagcaccacctatctgaaccaaacctaaa 20395238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 125 - 242
Target Start/End: Original strand, 55854319 - 55854436
Alignment:
Q  125 gtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacct 224  Q
    |||||||| |||||||||| |||||||| | | | |||||| |||||||||||||||||  || ||||| ||| |||||||||||||||||||||||| |    
T  55854319 gtgtgccaaaagaactactctacaaatatagagtcatacaaacaaccaaaacaaaccattacgtgatgctcaagcattgtaagggacttgaacaccacat 55854418  T
Q  225 atctgaaccaaacctaaa 242  Q
    ||||||||||||||||||    
T  55854419 atctgaaccaaacctaaa 55854436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 242
Target Start/End: Original strand, 53779543 - 53779687
Alignment:
Q  98 caccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaacaaaccatcgcgcgatgcccaa 197  Q
    |||||||||||||||| |||| ||||||||||||| ||||| ||||||||||  ||| | | |||||| |||||||||||||||||   || ||||||||    
T  53779543 caccaaaagcaactctcctagcacaaggtgtgccaaaagaattactttacaagaacatagtcatacaaacaaccaaaacaaaccattaagcaatgcccaa 53779642  T
Q  198 acattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
     ||||| | ||||||| | ||||||||||||| ||||||||||||    
T  53779643 gcattggatgggactttagcaccacctatctgtaccaaacctaaa 53779687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 10563979 - 10563807
Alignment:
Q  70 gaacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaacca 168  Q
    |||||| |||||||||||| |||||||| |||||||||||||||  |||| | ||||||||||| ||||| ||||| ||||  ||| | | |||||| ||    
T  10563979 gaacaatcaaaaatggaatatatattaaacaccaaaagcaactcccctagcataaggtgtgccagaagaattactt-acaagaacagagtcatacaaaca 10563881  T
Q  169 accaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    |||||||||||||||   || ||||||||  |||| ||||||||||| ||||| ||||||| ||||||||||||    
T  10563880 accaaaacaaaccattaagcaatgcccaagtattggaagggacttgagcaccaactatctgtaccaaacctaaa 10563807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 242
Target Start/End: Original strand, 18935155 - 18935310
Alignment:
Q  89 tatattaaccaccaaaagcaa-ctcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaa-caaaccatcgc 186  Q
    |||||||||| |||||||||| |||  |||| ||||||||||||| | ||| ||||||| ||| | | | | | ||||  | |||||| ||||||||       
T  18935155 tatattaaccgccaaaagcaaactccactagcacaaggtgtgccaaatgaattactttaaaaacaaacagtcagacaagtatccaaaaacaaaccattaa 18935254  T
Q  187 gcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    | ||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  18935255 gtgatgcccaaacattgaaagggacttgaacaccaactatctgtaccaaacctaaa 18935310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 71 - 244
Target Start/End: Complemental strand, 8695560 - 8695387
Alignment:
Q  71 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaac 170  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  8695560 aacaaacaaaaatataattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaagaactactttacaaatacagagttatacaaccaac 8695461  T
Q  171 caaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaaga 244  Q
    |||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8695460 caaaacaaaccattacgcgatgcccaagcattgtaagggacttgaacaccacctatctgaaccaaacctaaaga 8695387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 71 - 244
Target Start/End: Complemental strand, 9047447 - 9047274
Alignment:
Q  71 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaac 170  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  9047447 aacaaacaaaaatataattatattaaccaccaaaagcaactcttctagcacaaggtgtgccacaagaactactttacaaatacagagttatacaaccaac 9047348  T
Q  171 caaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaaga 244  Q
    |||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9047347 caaaacaaaccattacgcgatgcccaagcattgtaagggacttgaacaccacctatctgaaccaaacctaaaga 9047274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 11639436 - 11639608
Alignment:
Q  70 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaa 169  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| ||||||||||||||||||||| | | ||||||||||    
T  11639436 gaacaatcaaaaatggaattatattaaccaccaaaatcaactcttcttgcacaaggtgtgccaaaagaactactttacaaatacagagtcatacaaccaa 11639535  T
Q  170 ccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11639536 ccaaaacaaaccattacgcgatgcccaagcattgtaagggacttgaacaccacctatctgaaccaaacctaaa 11639608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 33121987 - 33121815
Alignment:
Q  70 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaa 169  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||| | | |||||||| || |||| ||||| |||||||| | | | |||||| |||    
T  33121987 gaacaatcaaaaatggaattatattaatcaccaaaagcaactcttctggcataaggtgtgtcaaaagagctactctacaaatatagagtcatacaaacaa 33121888  T
Q  170 ccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||||||||||  || ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||    
T  33121887 ccaaaacaaaccattacgtgatgcccaagcattgtaagggacttaaacaccacatatctgaaccaaacctaaa 33121815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 36634916 - 36635080
Alignment:
Q  78 aaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaaca 177  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||| |||||| | | | | |||||| |||||||||||    
T  36634916 aaaaatggaattatattaatcaccaaaagcaactcttttagtataaggtgtgccagaagaactactctacaaacatagagtcatacaaacaaccaaaaca 36635015  T
Q  178 aaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||  || ||||| |||||||| |||||||||||||||||||  ||| ||| ||||||||||    
T  36635016 aaccattacgtgatgctcaaacattataagggacttgaacaccacacatcagaagcaaacctaaa 36635080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 32093583 - 32093412
Alignment:
Q  70 gaacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaacca 168  Q
    |||||| ||||||||| || |||||||||||||||||||| ||| | |||||||||| |||||| |||| ||||| |||||| ||| | | ||| || ||    
T  32093583 gaacaatcaaaaatgggatatatattaaccaccaaaagcagctcctatagtacaaggcgtgccaaaagagctactctacaaacacagagtcataaaagca 32093484  T
Q  169 accaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    | |||||  || |||| || ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  32093483 aacaaaa--aatcatcacgtgatgcccaaacattggaagggacttgagcaccacctatctgaaccaaacctaaa 32093412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 19221606 - 19221769
Alignment:
Q  78 aaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaat-acaaaattatacaaccaaccaaaa 175  Q
    ||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||||| ||   ||||||||||||  ||  | | |||||| |||||| ||    
T  19221606 aaaaatggaatatatattaacaaccaaaagcaactcctctagcacaaggtgtgccaaaa---ctactttacaaaacaccgagtcatacaaacaaccataa 19221702  T
Q  176 caaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||||   ||||||||||||||||| |||| |||||| ||||||||||||| ||||||||||||    
T  19221703 caaaccattaagcgatgcccaaacattggaaggaacttgagcaccacctatctgtaccaaacctaaa 19221769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 25342004 - 25341832
Alignment:
Q  71 aacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaa 169  Q
    ||||| |||||||| ||| ||||||||||||||||||||||   ||||| | ||||||||||| ||||||||||||||||| | | | | ||||||  ||    
T  25342004 aacaatcaaaaatgaaatatatattaaccaccaaaagcaaccactctagcataaggtgtgccaaaagaactactttacaaacatagagtcatacaaataa 25341905  T
Q  170 ccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    |||||||||| |||   |||||| |||| ||||| ||||||||||| |||||| |||||| ||||||||||||    
T  25341904 ccaaaacaaatcattaagcgatgtccaagcattgaaagggacttgagcaccacatatctgtaccaaacctaaa 25341832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 26845340 - 26845513
Alignment:
Q  70 gaacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaat-tatacaacc 167  Q
    |||||| |||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||| | ||||| ||||||||||| ||| | |  | |||| |    
T  26845340 gaacaatcaaaaatggaatatatattaac-accaaaagcaactcctctagcacaaggtgtgctaaaagaattactttacaaaaacagagtcaaaacaaac 26845438  T
Q  168 aaccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    |||||| |||||||||   |||||| |||| ||||| || |||||||| ||||||||||||| ||||||||||||    
T  26845439 aaccaatacaaaccattaagcgatgtccaagcattggaaaggacttgagcaccacctatctgtaccaaacctaaa 26845513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 47536747 - 47536910
Alignment:
Q  78 aaaaatggaatt-atattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaac 176  Q
    |||||||||||| |||||||||||||||| || ||| | ||| ||||| ||||||| |||| ||||| |||||| ||| | | |||||| ||| |||||     
T  47536747 aaaaatggaatttatattaaccaccaaaaacagctcctgtagcacaagatgtgccaaaagagctactctacaaacacagagtcatacaaacaaacaaaa- 47536845  T
Q  177 aaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
     || |||  |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  47536846 -aagcattacgcgatgcccaagcattggaagggacttgagcaccacctatctgaaccaaacctaaa 47536910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 50543794 - 50543861
Alignment:
Q  173 aaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaaccta 240  Q
    |||||||||||   ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  50543794 aaacaaaccattaggcgatgcccaaacattggaagggacttgaacaccacctatctgtaccaaaccta 50543861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 32233731 - 32233670
Alignment:
Q  88 ttatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaa 149  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||| |||||    
T  32233731 ttatattaaccaccaaaagcaactcctctagcacaaggtgtgccaaaagaactactctacaa 32233670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 1764603 - 1764675
Alignment:
Q  71 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactact 143  Q
    ||||| |||||||| ||||||||||| ||||||||||||||||||||  | ||||||||||| ||||||||||    
T  1764603 aacaatcaaaaatgaaattatattaatcaccaaaagcaactcttctaacataaggtgtgccaaaagaactact 1764675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 24124506 - 24124339
Alignment:
Q  78 aaaaatggaat-tatattaaccaccaaaagcaa-ctcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaa 175  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||| |||| ||||| || | ||| ||||||| ||| | | | | | |||| || ||||||    
T  24124506 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaagtgtgtcaaaggaattactttaaaaacaaacagtcaaacaagcatccaaaa 24124407  T
Q  176 -caaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
     ||||||||   | |||||||||  || | ||||||||||||||||||||||||| ||||||||||||    
T  24124406 acaaaccattaagtgatgcccaagtatcgaaagggacttgaacaccacctatctgtaccaaacctaaa 24124339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 49501003 - 49500930
Alignment:
Q  71 aacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactact 143  Q
    ||||| |||||||||||| |||||||||||| ||||||||||| ||||| ||||| ||||||| ||||| ||||    
T  49501003 aacaagcaaaaatggaatatatattaaccacaaaaagcaactcctctagcacaagatgtgccaaaagaattact 49500930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 43122349 - 43122275
Alignment:
Q  70 gaacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactact 143  Q
    |||||| |||||||||||| |||||||||||| ||||||||||| ||||| | ||| ||||||| ||||| ||||    
T  43122349 gaacaagcaaaaatggaatatatattaaccacaaaaagcaactcctctagcataagatgtgccaaaagaattact 43122275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 46664947 - 46665021
Alignment:
Q  70 gaacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactact 143  Q
    |||||| ||||||| |||| |||||||||||| ||||| ||||| ||||| ||||| ||||||| ||||| ||||    
T  46664947 gaacaagcaaaaatagaatatatattaaccacaaaaagtaactcctctagcacaagatgtgccaaaagaattact 46665021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 17079861 - 17079689
Alignment:
Q  70 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaa 169  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| | | |||||| |||    
T  17079861 gaacaatcaaaaatggaattatattaaccaccaaaagaaactcttctagcacaaggtgtgccaaaagaactactttacaaatacagagtcatacaaacaa 17079762  T
Q  170 ccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  17079761 ccaaaacaaaccattacgcgatgcccaagcattgtaagggacttgaacaccacttatctgaaccaaacctaaa 17079689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 242
Target Start/End: Complemental strand, 9199898 - 9199750
Alignment:
Q  93 ttaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaacaaaccatcgcgcgatg 192  Q
    |||| ||||||||||||||||||||| |||||||||| || |||||||||| |||||||| | |||  ||||| ||||| |||||||| ||  || ||||    
T  9199898 ttaatcaccaaaagcaactcttctagcacaaggtgtgtcaaaagaactactctacaaataaagaatcgtacaaacaacc-aaacaaacaattacgtgatg 9199800  T
Q  193 cccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||||||||||||||||||| |||||| | || ||||||||||||||    
T  9199799 cccaaacattgtaagggacttgagcaccacatctcagaaccaaacctaaa 9199750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 6831600 - 6831488
Alignment:
Q  71 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaac 170  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||  | | | | |||||| ||||    
T  6831600 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagaactactttacaaccatagagtcatacaaacaac 6831501  T
Q  171 caaaacaaaccat 183  Q
    |||| ||||||||    
T  6831500 caaagcaaaccat 6831488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 242
Target Start/End: Complemental strand, 11061518 - 11061354
Alignment:
Q  77 caaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaa 175  Q
    |||||||||||| |||| ||||||||||||||| |||   ||| ||||||||||||| |||| ||||| |||||| ||| | | |||||  | | |||||    
T  11061518 caaaaatggaatatataataaccaccaaaagcagctcaagtagcacaaggtgtgccaaaagagctactctacaaacacagagtcatacatacgaacaaaa 11061419  T
Q  176 caaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
      ||| | | |||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||    
T  11061418 --aactaacacgcgatgcccaagcattggaagggacttgagcaccacctatctgaaccaaacttaaa 11061354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 17874464 - 17874299
Alignment:
Q  78 aaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaac 176  Q
    ||||||||||| |||||||| |||||||||||||||  |||  ||||| ||||||| ||||| ||||||||||  ||| | | |||||| ||||||||||    
T  17874464 aaaaatggaatatatattaaacaccaaaagcaactcccctaacacaagttgtgccagaagaattactttacaagaacagagtcatacaaacaaccaaaac 17874365  T
Q  177 aaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||  |   || ||| |||||||||| ||||||||||| |||||| ||| ||  |||||||||||    
T  17874364 aaacacttaagcaatggccaaacattggaagggacttgagcaccacttatatgtgccaaacctaaa 17874299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 242
Target Start/End: Original strand, 33722551 - 33722695
Alignment:
Q  98 caccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaacaaaccatcgcgcgatgcccaa 197  Q
    ||||||||||||||| |||| |||||||||||  | || || |||||||||| |||||| | |||||| | ||||||||||| | |   |  ||||||||    
T  33722551 caccaaaagcaactcctctaatacaaggtgtgttaaaaaaattactttacaagtacaaagtcatacaaactaccaaaacaaatcgttaagtaatgcccaa 33722650  T
Q  198 acattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
     ||||| ||| ||||||| |||||| |||||| ||||||||||||    
T  33722651 gcattgaaagagacttgagcaccacttatctgtaccaaacctaaa 33722695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 26526008 - 26526080
Alignment:
Q  78 aaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaa 150  Q
    ||||||||||| ||||||||| |||||||||||||  ||||| ||||||||||| | ||||| |||| ||||||    
T  26526008 aaaaatggaatatatattaac-accaaaagcaacttctctagcacaaggtgtgctaaaagaattactgtacaaa 26526080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 3000410 - 3000246
Alignment:
Q  78 aaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaaca 177  Q
    ||||||||||||||||||| ||||||||||||||||||| | ||||||||||||| |||||||||| |||||||  | | | |||||| |||||||||||    
T  3000410 aaaaatggaattatattaatcaccaaaagcaactcttctggcacaaggtgtgccaaaagaactactctacaaatttagagtcatacaaacaaccaaaaca 3000311  T
Q  178 aaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||  || ||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  3000310 aaccattacgtgatgcccaagcattgtaagggacttgaacaccacatatctgaaccaaacctaaa 3000246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 7075590 - 7075748
Alignment:
Q  78 aaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaaca 177  Q
    ||||||||||||||||||| || |||||||||||||||||| ||||||||||||| |||| |||||  |||||   | | | |||||| |||||||||||    
T  7075590 aaaaatggaattatattaatcatcaaaagcaactcttctagcacaaggtgtgccaaaagagctactcaacaaaattagagtcatacaaacaaccaaaaca 7075689  T
Q  178 aaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaa 236  Q
    ||||||  || ||||||||| |||| ||||||| ||||||||||| |||||||||||||    
T  7075690 aaccattacgtgatgcccaagcattataagggatttgaacaccacatatctgaaccaaa 7075748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 9393026 - 9393150
Alignment:
Q  89 tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaacaaaccatcgcgc 188  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||||||| | | | | |||||| |||||||||||||||||   ||    
T  9393026 tatattaaccaccaaaagcaactcctctagcacaaggtgtgccaaaagaaatactttacaaacatagagtcatacaaacaaccaaaacaaaccattaagc 9393125  T
Q  189 gatgcccaaacattgtaagggactt 213  Q
     |||||||||||||| ||| |||||    
T  9393126 aatgcccaaacattgaaagagactt 9393150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 24314086 - 24313921
Alignment:
Q  78 aaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaat-tatacaaccaaccaaaa 175  Q
    ||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||| | | ||| ||||||||||| ||| | |  | |||| ||||||| |    
T  24314086 aaaaatggaatatatattaac-accaaaagcaactcctctagcacaaggtgtgctaaacgaattactttacaaaaacagagtcaaaacaaacaaccaata 24313988  T
Q  176 caaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||||   ||||||||||| ||||| || |||||||| ||||||||||||  ||||||||||||    
T  24313987 caaaccattaagcgatgcccaagcattggaaaggacttgagcaccacctatctctaccaaacctaaa 24313921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 228
Target Start/End: Complemental strand, 18704457 - 18704305
Alignment:
Q  78 aaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaa--aattatacaaccaacc-aa 173  Q
    ||||||||||| ||||||||||| |||||||||||| ||||| ||||| ||||||| ||||| |||  | |||||||||  | | | |||| ||||| ||    
T  18704457 aaaaatggaatatatattaaccatcaaaagcaactcgtctagcacaagatgtgccaaaagaattac--tgcaaatacaaagagtcagacaagcaaccaaa 18704360  T
Q  174 aacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatct 228  Q
    ||||||||||   |||||||| ||| |||| ||||||||||||||||||||||||    
T  18704359 aacaaaccattaagcgatgcctaaatattgaaagggacttgaacaccacctatct 18704305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 242
Target Start/End: Original strand, 30273503 - 30273642
Alignment:
Q  104 aagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaat-tatacaaccaaccaaaacaaaccatcgcgcgatgcccaaacatt 202  Q
    ||||||||| ||||| ||||||||||| | ||||| ||||||||||| ||| | |  | |||| ||||||| |||||||||    ||||||| |||||||    
T  30273503 aagcaactcctctagcacaaggtgtgctaaaagaattactttacaaaaacagagtcaaaacaaacaaccaatacaaaccattaaacgatgcctaaacatt 30273602  T
Q  203 gtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    | || |||||||| ||||||||||||| ||||||||||||    
T  30273603 ggaaaggacttgagcaccacctatctgtaccaaacctaaa 30273642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 242
Target Start/End: Original strand, 1379617 - 1379724
Alignment:
Q  134 aagaactactttacaaatacaaaattatacaaccaaccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaacc 233  Q
    |||||||||| |||||||| | | | | |||| |||||||| ||||||||  || ||||||||||||||||||||||||||| |||||| | || ||| |    
T  1379617 aagaactactctacaaataaagagtcaaacaaacaaccaaa-caaaccattacgtgatgcccaaacattgtaagggacttgagcaccacatctcagaatc 1379715  T
Q  234 aaacctaaa 242  Q
    |||||||||    
T  1379716 aaacctaaa 1379724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 22296001 - 22295919
Alignment:
Q  70 gaacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaat 151  Q
    |||||| |||||||| ||| |||||||||||  |||||||| || ||||  ||||||||||||| ||||||||||||||||||    
T  22296001 gaacaatcaaaaatgaaatatatattaaccattaaaagcaattcctctaacacaaggtgtgccaaaagaactactttacaaat 22295919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 1379570 - 1379614
Alignment:
Q  71 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttc 115  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||    
T  1379570 aacaatcaaaaatggaattatattaatcaccaaaagcaactcttc 1379614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 36272886 - 36272935
Alignment:
Q  89 tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaa 138  Q
    |||||||||||| ||||||||||| |||| |||||| ||||||| |||||    
T  36272886 tatattaaccacaaaaagcaactcctctaatacaagatgtgccaaaagaa 36272935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 34231169 - 34231341
Alignment:
Q  70 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaa 169  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||| |||| ||||| |||||||  | | | |||||| |||    
T  34231169 gaacaatcaaaaatggaattatattaatcaccaaaagcaactcttctggcacaaggtgtgccaaaagagctactctacaaatttagagtcatacaaacaa 34231268  T
Q  170 ccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||||||||||   | ||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  34231269 ccaaaacaaaccattatgtgatgcccaagcattgtaagggacttgaacaccacatatctgaaccaaacctaaa 34231341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 29114219 - 29114047
Alignment:
Q  70 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaa 169  Q
    |||||| |||||||||||||||||||| |||||||||||||| |||||| ||||||||||||| |||| ||||| || ||||  | | | |||||| |||    
T  29114219 gaacaatcaaaaatggaattatattaatcaccaaaagcaactattctagcacaaggtgtgccaaaagagctactctaaaaatttagagtcatacaaacaa 29114120  T
Q  170 ccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||| |||||| |||  || ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||    
T  29114119 ccataacaaatcattacgtgatgcccaagcattgtaagggacttgaacaccacatatctgaaccaaaactaaa 29114047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 18654496 - 18654330
Alignment:
Q  78 aaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaa- 175  Q
    ||||||||||| || ||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||| | | |||||| |||||||||     
T  18654496 aaaaatggaatataaattaaccaccaaaagcaactcctctagcacaaggtgtgccaaaagaactactttacaaacacagagtcatacaaacaaccaaaac 18654397  T
Q  176 caaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||||   |||||||| |||||||| ||||||||||| |||||| ||| || ||||||||||||    
T  18654396 caaaccattaagcgatgcctaaacattgaaagggacttgagcaccacatatatgtaccaaacctaaa 18654330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 24752890 - 24753015
Alignment:
Q  72 acaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaacc 171  Q
    |||| ||||||| |||||||||||||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||| | | |||||| ||| |    
T  24752890 acaatcaaaaatagaattatattaaccaccaaaagcagctcttgtagcacaaggtgtgccaaaagaactactttacaaatacagagtcatacaaacaatc 24752989  T
Q  172 aaaacaaaccatcgcgcgatgcccaa 197  Q
    ||||||||||||  ||||||||||||    
T  24752990 aaaacaaaccattacgcgatgcccaa 24753015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 7459341 - 7459169
Alignment:
Q  70 gaacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaacca 168  Q
    ||||||||||||||||||| |||||||| |||||||||||||||  |||| ||||||||||||| ||||| ||||| ||||  ||| |   |||||| ||    
T  7459341 gaacaaacaaaaatggaatatatattaaacaccaaaagcaactcccctagcacaaggtgtgccaaaagaattactt-acaagaacagagccatacaaaca 7459243  T
Q  169 accaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    |||||||||||||||   || |||||||| || || |||||| |||| ||||||||||||| ||||||||||||    
T  7459242 accaaaacaaaccattaagcaatgcccaagcaatggaagggaattgagcaccacctatctgtaccaaacctaaa 7459169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 4076751 - 4076917
Alignment:
Q  78 aaaaatggaat-tatattaaccaccaaaagcaa-ctcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaa 175  Q
    ||||||||||| |||| ||| |||||||||||| ||| ||||| ||||||||||||| ||||| ||||||| ||| | | | | | |||| || ||||||    
T  4076751 aaaaatggaatatataataatcaccaaaagcaaactcctctagcacaaggtgtgccaaaagaattactttaaaaacaaagagtcagacaagcatccaaaa 4076850  T
Q  176 caaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||||   | ||||||||||||||| |||||||||||||||||| |||||| ||||||||||||    
T  4076851 caaaccattaagtgatgcccaaacattgaaagggacttgaacaccacttatctgtaccaaacctaaa 4076917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 20047794 - 20047688
Alignment:
Q  78 aaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaac 176  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| | | | | |||||| ||||||||||    
T  20047794 aaaaatggaatatatattaaccaccaaaagcaactcctctagtacaaggtgtgccaaaagaactattttacaaacatagagtcatacaaacaaccaaaac 20047695  T
Q  177 aaaccat 183  Q
    |||||||    
T  20047694 aaaccat 20047688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 71 - 178
Target Start/End: Complemental strand, 20037670 - 20037562
Alignment:
Q  71 aacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaa 169  Q
    ||||| |||||||||||| |||||||||||||||||||||||| ||||| | ||||||||||| ||||||||||||||||| | | | | |||||| |||    
T  20037670 aacaatcaaaaatggaatatatattaaccaccaaaagcaactcctctagcataaggtgtgccaaaagaactactttacaaacatagagtcatacaaacaa 20037571  T
Q  170 ccaaaacaa 178  Q
    |||||||||    
T  20037570 ccaaaacaa 20037562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 46177725 - 46177897
Alignment:
Q  71 aacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattata-caacca 168  Q
    ||||| |||||||||||| ||||||| | ||||||| |||||| ||||||| ||||||||| | ||||| ||||||||||| ||| | | | | ||| ||    
T  46177725 aacaatcaaaaatggaatatatattagc-accaaaaacaactcctctagtataaggtgtgctaaaagaattactttacaaaaacagagtcaaaacaaaca 46177823  T
Q  169 accaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||  ||||| |||   ||||||||||||||||| || |||||||| ||||||||||||| ||||||||||||    
T  46177824 accactacaaatcattaagcgatgcccaaacattggaaaggacttgagcaccacctatctgtaccaaacctaaa 46177897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 28060165 - 28060220
Alignment:
Q  187 gcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||||||| ||||| |||||||||||||||||||||| || || |||||||||    
T  28060165 gcgatgcccaagcattgaaagggacttgaacaccacctatatgtactaaacctaaa 28060220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 10282492 - 10282419
Alignment:
Q  71 aacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactact 143  Q
    ||||| |||||||||||| |||||||||||| |||| |||||| ||||| ||||  ||||||| ||||| ||||    
T  10282492 aacaagcaaaaatggaatatatattaaccacaaaaaacaactcctctagcacaaaatgtgccaaaagaattact 10282419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 23397332 - 23397272
Alignment:
Q  70 gaacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgc 130  Q
    |||||| |||||||||||| ||||||||| |||||||| ||||| ||||| |||||||||||    
T  23397332 gaacaatcaaaaatggaatatatattaac-accaaaagaaactcctctagcacaaggtgtgc 23397272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 33796914 - 33796870
Alignment:
Q  193 cccaaacattgtaagggacttgaacaccacctatctgaaccaaac 237  Q
    ||||||||||| || || ||||||||||||||||||| |||||||    
T  33796914 cccaaacattgaaaagggcttgaacaccacctatctgtaccaaac 33796870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 4416362 - 4416198
Alignment:
Q  78 aaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaaca 177  Q
    |||||||||||||||| || ||||||||||||||||||||| |||||||||| || |||| ||||| ||||||   | | | |||||| |||||||||||    
T  4416362 aaaaatggaattatataaatcaccaaaagcaactcttctagcacaaggtgtgtcaaaagagctactctacaaacttagagtcatacaaacaaccaaaaca 4416263  T
Q  178 aaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||  || ||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  4416262 aaccattacgtgatgcccaagcattgtaagggacttgaacaccacatatctgaaccaaacctaaa 4416198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 4922704 - 4922876
Alignment:
Q  70 gaacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaacca 168  Q
    |||||| |||||||||||| ||||||||| |||||||||||||| ||||| | ||||||||| | ||||| ||||||||||| ||| | | | |||| ||    
T  4922704 gaacaatcaaaaatggaatatatattaac-accaaaagcaactcctctagcataaggtgtgctaaaagaattactttacaaaaacagagtcaaacaaaca 4922802  T
Q  169 accaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||| |||||||||   ||||||||||| ||||| || |||||||| ||||||||||||| ||||||||||||    
T  4922803 accaatacaaaccattaagcgatgcccaagcattggaaaggacttgagcaccacctatctgtaccaaacctaaa 4922876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 20209389 - 20209217
Alignment:
Q  71 aacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaat-tatacaacca 168  Q
    ||||| |||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||| | ||||| ||||||||||| ||| | |  | |||| ||    
T  20209389 aacaatcaaaaatggaatatatattaac-accaaaagcaactcctctagcacaaggtgtgctaaaagaattactttacaaaaacagagtcaaaacaaaca 20209291  T
Q  169 accaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||| |||||||||   ||||||||||| ||||| || |||||||| ||||||||||||| ||||||||||||    
T  20209290 accaatacaaaccattaagcgatgcccaagcattggaaaggacttgagcaccacctatctgtaccaaacctaaa 20209217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 34875107 - 34874937
Alignment:
Q  71 aacaaacaaaaatggaatt-atattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaa 169  Q
    ||||| ||||||||||||| ||||||||||||||||||| ||  | ||| ||||||||||||| |||| ||||| |||||| ||| | | |||||| |||    
T  34875107 aacaatcaaaaatggaatttatattaaccaccaaaagcagcttctgtagcacaaggtgtgccaaaagagctactctacaaacacagagtcatacaaacaa 34875008  T
Q  170 ccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
     |||||  ||| ||  ||||||| |||| ||||| ||||||||||| |||||||||||| |||||||||||||    
T  34875007 acaaaa--aactattacgcgatgtccaagcattggaagggacttgagcaccacctatctaaaccaaacctaaa 34874937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 242
Target Start/End: Complemental strand, 7001413 - 7001263
Alignment:
Q  89 tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaacaaaccatcgcgc 188  Q
    |||||||||||||||||||| ||| | ||| | |||| || ||| |||| ||||| |||||| ||||| | |||||| ||| |||||   |||||| |||    
T  7001413 tatattaaccaccaaaagcagctcctatagcataaggcgtaccaaaagagctactctacaaacacaaagtcatacaaacaaacaaaa---accatcacgc 7001317  T
Q  189 gatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||||| ||||| |||| ||||||  |||||||||||||||||||||||||    
T  7001316 gatgcccaagcattggaaggaacttgagaaccacctatctgaaccaaacctaaa 7001263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 40089806 - 40089981
Alignment:
Q  70 gaacaaacaaaaatggaat-tatattaaccaccaaaagc-aactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaacc 167  Q
    |||||| |||||||| ||| ||||||||||||||||||| ||| | ||||| ||||||||||||| | ||| | ||||| ||| | ||| ||| |||| |    
T  40089806 gaacaatcaaaaatgtaatatatattaaccaccaaaagcgaacccctctagcacaaggtgtgccaaaggaattgctttaaaaacataaagttagacaagc 40089905  T
Q  168 aacca-aaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    | ||| |||||| ||||   ||||||||||| ||||| ||||||||||||||||||||||||  ||||||||||||    
T  40089906 acccataaacaatccattaagcgatgcccaagcattgaaagggacttgaacaccacctatctataccaaacctaaa 40089981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 27895375 - 27895442
Alignment:
Q  70 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaaga 137  Q
    |||||| |||||||||||||||||||||||||||||||||||||| | | ||||||||||||| ||||    
T  27895375 gaacaatcaaaaatggaattatattaaccaccaaaagcaactcttttggcacaaggtgtgccaaaaga 27895442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 6048714 - 6048866
Alignment:
Q  78 aaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaac 176  Q
    ||||||||||| |||||||||||||||||||||||| ||||| | ||||||||||| |||||||||| |||||| ||| | | |||||| | |  |||      
T  6048714 aaaaatggaatatatattaaccaccaaaagcaactcctctagcataaggtgtgccaaaagaactactctacaaacacagagtcatacaaaccattaaa-- 6048811  T
Q  177 aaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
               |||||||||||||||| |||||||||||||||||| |||||  ||||||||||||    
T  6048812 -----------cgatgcccaaacattgaaagggacttgaacaccacatatctataccaaacctaaa 6048866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 214
Target Start/End: Original strand, 8891985 - 8892107
Alignment:
Q  89 tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaacaaaccatcgcgc 188  Q
    |||||||||||||||||||| ||| | ||| |||||| |||||| |||| ||||| |||||| ||| | | |||||| ||| |||   |||||||| ||     
T  8891985 tatattaaccaccaaaagcagctcctatagcacaaggcgtgccaaaagagctactctacaaacacatagtcatacaaacaaacaa---aaaccatcacgt 8892081  T
Q  189 gatgcccaaacattgtaagggacttg 214  Q
    ||||||||||||||| ||||||||||    
T  8892082 gatgcccaaacattggaagggacttg 8892107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 71 - 227
Target Start/End: Complemental strand, 10584084 - 10583929
Alignment:
Q  71 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaac 170  Q
    ||||| |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||| ||||| |||||||  ||| | |||||| ||||    
T  10584084 aacaatcaaaaatgaaattatattaatcaccaaaagcaactcttctagcacaaggtgtgccaaaagagctactctacaaatttaaagtcatacaaacaac 10583985  T
Q  171 caaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatc 227  Q
     |||||||| |||  || |||||||||||||||||| ||||||||||||||| ||||    
T  10583984 taaaacaaatcattacgtgatgcccaaacattgtaa-ggacttgaacaccacatatc 10583929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 17658302 - 17658472
Alignment:
Q  70 gaacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaacca 168  Q
    |||||| |||||||||||| |||||||||||||||||||| ||| | ||| ||||||||||||| |||| |||||||||||| ||||| | |||||        
T  17658302 gaacaaccaaaaatggaatatatattaaccaccaaaagcagctcctgtagcacaaggtgtgccaaaagagctactttacaaacacaaagtcataca---t 17658398  T
Q  169 accaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    |  || | |||| ||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  17658399 atgaacaaaaactatcacgcgatgcccaagcattggaagggacttgagcaccacctatctgaaccaaacctaaa 17658472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 89 - 242
Target Start/End: Complemental strand, 45256476 - 45256326
Alignment:
Q  89 tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaacaaaccatcgcgc 188  Q
    ||||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||| ||||  ||| | | |||||| |||||||||||||||||   ||    
T  45256476 tatattaaccaccaaaaacaactcctctagcacaaggtgtgccaaaagaactacttcacaa--acagagtcatacaaacaaccaaaacaaaccattaagc 45256379  T
Q  189 gatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    ||||||||||||||| || |||||||| |||||| |||||| ||||||||||||    
T  45256378 gatgcccaaacattg-aaaggacttgagcaccacatatctgtaccaaacctaaa 45256326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 8446839 - 8446700
Alignment:
Q  71 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaac 170  Q
    ||||| |||||||||||||||||||| || |||||||||||||||| | ||||||||||||  |||| ||||| |||||||  | | | |||||| ||||    
T  8446839 aacaatcaaaaatggaattatattaatcatcaaaagcaactcttctggcacaaggtgtgccgaaagagctactctacaaatttagagtcatacaaacaac 8446740  T
Q  171 caaaacaaaccatcgcgcgatgcccaaacattgtaaggga 210  Q
    |||||||||||||  || ||||||||||||||||||||||    
T  8446739 caaaacaaaccattacgtgatgcccaaacattgtaaggga 8446700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 242
Target Start/End: Complemental strand, 29470847 - 29470696
Alignment:
Q  89 tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaacaaaccatcgcgc 188  Q
    |||||||||||||||||||| ||| | ||| | ||||||||||| |||| ||||| |||||| ||| | | |||||| | | |||||  ||||||| |||    
T  29470847 tatattaaccaccaaaagcagctcctgtagcataaggtgtgccaaaagagctactctacaaacacagagtcatacaaacgaacaaaa--aaccatcacgc 29470750  T
Q  189 gatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    |||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||    
T  29470749 gatgtccaagcattggaagagacttgaacaccacctatctgaaccaaacctaaa 29470696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 23679681 - 23679805
Alignment:
Q  116 tagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttga 215  Q
    ||||| ||||||||||| || | ||||| |||||||||| | | |||||| ||| |||||  ||||||| |||||| ||||||||||| |||||||||||    
T  23679681 tagtataaggtgtgccaaaatagctactctacaaatacagagtcatacaaacaaacaaaa--aaccatcacgcgatacccaaacattggaagggacttga 23679778  T
Q  216 acaccacctatctgaaccaaacctaaa 242  Q
      |||||||||||||||||||||||||    
T  23679779 gtaccacctatctgaaccaaacctaaa 23679805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 242
Target Start/End: Original strand, 26030968 - 26031134
Alignment:
Q  77 caaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattata-caaccaaccaaa 174  Q
    |||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||| | ||||| | |||||| || ||| | | | | ||| |||||||     
T  26030968 caaaaatggaatatatattaac-accaaaagcaactcctctagcacaaggtgtgctaaaagaattgctttaccaaaacagagtcaaaacaaacaaccaat 26031066  T
Q  175 acaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    |||||||||   ||||| ||||| ||||| || |||||||| ||||||||||||| |||||| |||||    
T  26031067 acaaaccattaagcgatacccaagcattggaaaggacttgagcaccacctatctgtaccaaatctaaa 26031134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 36156625 - 36156693
Alignment:
Q  71 aacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaa 138  Q
    ||||| |||||||| ||| |||||||||||| ||||| ||||||||||||||||| ||||||| |||||    
T  36156625 aacaagcaaaaatgaaatatatattaaccacaaaaagtaactcttctagtacaagatgtgccaaaagaa 36156693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 31082270 - 31082172
Alignment:
Q  78 aaaaatggaatt-atattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaa 175  Q
    |||||||||||| |||||||||||||||| |||||  | ||| ||||||||||||| |||| ||||| |||||| ||| | | |||||| ||| |||||    
T  31082270 aaaaatggaatttatattaaccaccaaaaacaacttatgtagcacaaggtgtgccaaaagagctactctacaaacacagagtcatacaaacaaacaaaa 31082172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 242
Target Start/End: Original strand, 11549 - 11720
Alignment:
Q  70 gaacaaacaaaaatggaat-tatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaacca 168  Q
    |||||| ||||||||| || |||||||||||||||||||| ||| | ||| |||||| |||||| |||| ||||| |||||| ||| |   |||||| ||    
T  11549 gaacaatcaaaaatgggatatatattaaccaccaaaagcagctcctatagcacaaggcgtgccaaaagagctactctacaaacacagagccatacaaaca 11648  T
Q  169 accaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    | |||||  ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  11649 aacaaaa--aaccatcacgcgatgcccaaacattggaagggacttgagcaccacctatctgaaccaaacctaaa 11720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 8458 - 8380
Alignment:
Q  70 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttaca 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||| ||||    
T  8458 gaacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagcacaagacgtgccacaagaactactataca 8380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0765 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 1455 - 1382
Alignment:
Q  71 aacaaacaaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactt 144  Q
    ||||||||||||||||| ||||||||  ||||||||||||||| |||| ||||||||||||| ||||| |||||    
T  1455 aacaaacaaaaatggaaatatattaaataccaaaagcaactctcctagcacaaggtgtgccagaagaattactt 1382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 1351 - 1456
Alignment:
Q  78 aaaaatggaattatattaaccaccaaaagcaactcttctagtacaaggtgtgccacaagaactactttacaaatacaaaattatacaaccaaccaaaaca 177  Q
    ||||||||||||||||||| ||| |||| |||||||| ||| ||||||||||||  |||||||||| || ||| | | | | |||||| ||||||||| |    
T  1351 aaaaatggaattatattaatcactaaaaacaactcttttagcacaaggtgtgccgaaagaactactctataaacatagagtcatacaaacaaccaaaata 1450  T
Q  178 aaccat 183  Q
    ||||||    
T  1451 aaccat 1456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 7090 - 7170
Alignment:
Q  162 acaaccaaccaaaacaaaccatcgcgcgatgcccaaacattgtaagggacttgaacaccacctatctgaaccaaacctaaa 242  Q
    |||| ||||||| |||||||||   ||||||||||||||||| || ||||||||  |||||||||||  || |||||||||    
T  7090 acaaacaaccaatacaaaccattaagcgatgcccaaacattggaaaggacttgagtaccacctatctatacaaaacctaaa 7170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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