View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_low_61 (Length: 243)
Name: NF16803_low_61
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 44767293 - 44767495
Alignment:
| Q |
20 |
agacaactctttgcaaagccgctccaaatccaacaaacaattaaaagagtacaatcaacatttaaacaaaacatcaacatgcaaattgaaaagattggaa |
119 |
Q |
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| T |
44767293 |
agacaactctttccaaagccgctccaaatccaacaaacaattaaaagagtataatcaacatttaaacaaaacatcaacatgcaaattgaaaagattggaa |
44767392 |
T |
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| Q |
120 |
acaagattattccatgaaattattcaagggaaaaagttatcgtttagtggttaataattgatgttcaatcattagtttggtccaaaatcacttatctaaa |
219 |
Q |
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| T |
44767393 |
agaagattattccatgaaattattcaagggaaaaagttatcgtttagtggttaataattgatgttcaatcattagtttggtccaaaattactcatctaaa |
44767492 |
T |
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| Q |
220 |
tca |
222 |
Q |
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||| |
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| T |
44767493 |
tca |
44767495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 44110921 - 44110872
Alignment:
| Q |
41 |
ctccaaatccaacaaacaattaaaagagtacaatcaacatttaaacaaaa |
90 |
Q |
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| T |
44110921 |
ctccaaacccaacaaacaattaaaagaatacaatcaatatttaaacaaaa |
44110872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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