View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_low_62 (Length: 222)
Name: NF16803_low_62
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_low_62 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3048867 - 3049108
Alignment:
| Q |
1 |
agaatgaatggtgtgaacggaaaag-------tataaataaccatctcgcttatttcactatcagttcttcaattgcaaagaccatcaaactgtttctac |
93 |
Q |
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| T |
3048867 |
agaatgaatggtgtgaacggaaaagagattcgtataaataaccatctggcttatttcactatcagttcttcaattgcaaagaccatcaaactgtttctac |
3048966 |
T |
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| Q |
94 |
aatgagcgtgatacactctaattatc----agtgaagaaaatgacactcttcgagtgagtgtcaactcctaaagaaataagagataaagaaagggcacgt |
189 |
Q |
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| T |
3048967 |
aatgagcatgatacactctaattatcttagagtgaagaaaatggcactcttcgagtgagtgtcaactcctaaagaaataagagatgaagaaagggcacgt |
3049066 |
T |
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| Q |
190 |
---------gtggaaattctagagagaaaatagatgagaaat |
222 |
Q |
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| T |
3049067 |
tttacgtgagtggaaattctagagagaaaatagatgagaaat |
3049108 |
T |
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Target: scaffold0189 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 10690 - 10631
Alignment:
| Q |
122 |
tgaagaaaatgacactcttcgagtgagtgtcaactcctaaagaaataagagataaagaaa |
181 |
Q |
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| T |
10690 |
tgaagaaaatggcactcttcgagtgagtgtaaactcctagagagaaaagagatgaagaaa |
10631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 34606004 - 34605944
Alignment:
| Q |
102 |
tgatacactctaattatca--gtgaagaaaatgacactcttcgagtgagtgtcaactccta |
160 |
Q |
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| T |
34606004 |
tgatacactctaattatcatagtaaagaaaatgacattttttgagtgagtgtcaactccta |
34605944 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 48474016 - 48473942
Alignment:
| Q |
102 |
tgatacactctaattatc----agtgaagaaaatgacactcttcgagtgagtgtcaactcctaaagaaataagagat |
174 |
Q |
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| T |
48474016 |
tgatacactctaattatctaagagtgaagaaaag--cactcttcgagtgagtgtcgactcctagagagaaaagagat |
48473942 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 35401157 - 35401109
Alignment:
| Q |
133 |
acactcttcgagtgagtgtcaactcctaaagaaataagagataaagaaa |
181 |
Q |
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| T |
35401157 |
acactcttcgagtgagtgtcaactcctactgagacaagagatgaagaaa |
35401109 |
T |
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