View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16803_low_8 (Length: 516)
Name: NF16803_low_8
Description: NF16803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16803_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 12 - 500
Target Start/End: Original strand, 5835277 - 5835784
Alignment:
| Q |
12 |
agcagagatagtgccaatgatcatcaacgttacatcaagatgatcagcaaaattgaaaagcatgtagaatggaactttttgttttgttttgttatctcta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5835277 |
agcagagatagtgccaatgatcatcaacgttacatcaagatgatcagcaaaattgaaaagcatgtagaatggaactttttgttttgttttgttatctcta |
5835376 |
T |
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| Q |
112 |
attccatgttgttgtgtaggtgatgatgaagaattatcatgtacattagggttttctgccatcactgatgatga------------------agaattaa |
193 |
Q |
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| T |
5835377 |
attccatgttgttgtgtaggtgatgatgaagaattatcatgtacattagggttttctgccatcactgatgatgatgatgatgatgatgatgaagaattaa |
5835476 |
T |
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| Q |
194 |
tgaaagtgttagtgatatgtgaactctatatataggtcacggagaatagaga--tacagttacaatatgttaatatagtcaataagtacttctaaacttt |
291 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5835477 |
tgaaagtgttagtgatatgtcaactctatatataggtcacggagaatagagagatacagttacaatatgtta-tatagtcaataagtacttctaaacttt |
5835575 |
T |
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| Q |
292 |
aggagcaagtcttttctttcttcacacgttcctactttcatgttggtgatgtgctgtggtattgctatattttgattttttagaaactaagcttcgttgt |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5835576 |
aggagcaagtcttttctttcttcacacgttcctactttcatgttggtgatgtgctgtggtattgttatattttgattttttagaaactaagcttcgttgt |
5835675 |
T |
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| Q |
392 |
tcaaaccccgaccaccactaaaaaattgaattttcttatttgttttttcggttttatattcttctagaaattatcattatttaccaaataaattatttaa |
491 |
Q |
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| T |
5835676 |
tcaaagctcgaccaccactgaaaaactgaattttcttatttgttttttcggttttatattcttctagaaattatcattatttaccaaataaattatttaa |
5835775 |
T |
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| Q |
492 |
actaatttt |
500 |
Q |
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||||||||| |
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| T |
5835776 |
actaatttt |
5835784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 5763422 - 5763325
Alignment:
| Q |
13 |
gcagagatagtgccaatgatcatcaacgttacatcaagatgatcagcaaaattgaaaagcatgtagaatggaactttttgttttgttttgttatctct |
110 |
Q |
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|||||||| ||||||||||||||||| |||||||||||| |||||||||| | || || ||| ||||| |||||| || || | |||||||||||| |
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| T |
5763422 |
gcagagatggtgccaatgatcatcaatgttacatcaagactatcagcaaaagtaaagagtttgtggaatgaaactttctggttggctttgttatctct |
5763325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 29332750 - 29332842
Alignment:
| Q |
13 |
gcagagatagtgccaatgatcatcaacgttacatcaagatgatcagcaaaattgaaaagcatgtagaatggaactttttgttttgttttgtta |
105 |
Q |
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||||| |||||||||||||||||||| ||||| |||||| ||||||||||| | || ||| |||||||||||||| |||| || | ||||||| |
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| T |
29332750 |
gcagaaatagtgccaatgatcatcaaagttacgtcaagacgatcagcaaaactaaagagcttgtagaatggaactatttggttggctttgtta |
29332842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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