View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16804_high_10 (Length: 414)
Name: NF16804_high_10
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16804_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Complemental strand, 28386325 - 28385954
Alignment:
| Q |
19 |
ctccgccttcacaccgttgaattcccctatcaacaagtcgacctccctaaaggcgttgagtctatgacctccaccactgaccctatcaccacttggaaga |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28386325 |
ctccgccttcacaccgttgaattcccctatcaacaagtcgacctccctaaaggcgttgagtctatgacctccaccactgaccctatcaccacttggaaga |
28386226 |
T |
|
| Q |
119 |
tccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgcattctcatgggctaa |
218 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28386225 |
tccataatggcgcaatgctcctcaatgaagcggttggggatttcgttgagaagaatccaccggattgtattattgctgactccgcattctcatgggctaa |
28386126 |
T |
|
| Q |
219 |
tgacttggcccacaagcttcaaatcccgaatctaacgtttaatggatcgtctctctttgctgtctcgatctttcattcccttcgaacaaacaatttactt |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28386125 |
tgacttggcccacaagcttcaaatcccgaatctaacgtttaatggatcgtctctctttgctgtctcgatctttcattctcttcgaacaaacaatttactt |
28386026 |
T |
|
| Q |
319 |
catacagatgctgatgctgattcagattcaagttcatatgtcgttccaaatcttcatcatgataatattacc |
390 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28386025 |
catacagatgctgatgctgattcagattcaagttcatatgtcgttccaaatcttcatcatgataatattacc |
28385954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 24 - 378
Target Start/End: Complemental strand, 12541668 - 12541314
Alignment:
| Q |
24 |
ccttcacaccgttgaattcccctatcaacaagtcgacctccctaaaggcgttgagtctatgacctccaccactgaccctatcaccacttggaagatccat |
123 |
Q |
| |
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||||||||| || || ||||||| ||||||||||||||||||||||| |||| |||||| |||||||||||||||| || ||| ||||||| || || |
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| T |
12541668 |
ccttcacactgtcgacttcccctccgaacaagtcgacctccctaaaggcattgaatctatgtcctccaccactgaccccattacctcttggaaaattcac |
12541569 |
T |
|
| Q |
124 |
aatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgcattctcatgggctaatgact |
223 |
Q |
| |
|
||||| |||||||||||| ||| ||| ||| ||||| |||| ||| |||||||| |||||||| ||||| || || | | |||||||| |||||||| |
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|
| T |
12541568 |
aatggtgcaatgctcctccatggacccattgatgattttgttgtgaataatccacctgattgtatcattgccgactcttcttactcatggggtaatgact |
12541469 |
T |
|
| Q |
224 |
tggcccacaagcttcaaatcccgaatctaacgtttaatggatcgtctctctttgctgtctcgatctttcattcccttcgaacaaacaatttacttcatac |
323 |
Q |
| |
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|||| | ||||| ||| | || ||| | || || |||||||| ||||| ||||||||||| || | | |||||| ||| ||||||||| |||||||| |
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| T |
12541468 |
tggctcgtaagctacaagtacccaatttcacattcaatggatcctctctttttgctgtctccctcatggaatcccttagaaaaaacaatttgcttcatac |
12541369 |
T |
|
| Q |
324 |
agatgctgatgctgattcagattcaagttcatatgtcgttccaaatcttcatcat |
378 |
Q |
| |
|
|| ||||| ||||||| ||||||||||| ||||||||||||||| ||| |||| |
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|
| T |
12541368 |
caattctgattctgattcggattcaagttcgtatgtcgttccaaattttcctcat |
12541314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 13441188 - 13440829
Alignment:
| Q |
19 |
ctccgccttcacaccgttgaattcccctatcaacaagtcgacctccctaaaggcgttgagtctatgacctccaccactgaccctatcaccacttggaaga |
118 |
Q |
| |
|
|||||| | |||||||| || || |||| |||||||||||||||||| ||||| |||| |||||| | |||||||||||| |||| ||| ||||||||| |
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| T |
13441188 |
ctccgcttccacaccgtcgactttccctcccaacaagtcgacctccctgaaggcattgaatctatgtcttccaccactgactctatgacctcttggaaga |
13441089 |
T |
|
| Q |
119 |
tccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgcattctcatgggctaa |
218 |
Q |
| |
|
|||| |||||||||||||||| ||| | | ||| ||||||| | ||||| ||||||| |||||||| || | || ||||||| | |||||||||| |
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|
| T |
13441088 |
tccaccgtggcgcaatgctcctccatggatccattgaggatttcatggagaaagatccaccagattgtatcatctccgactccgcatacccatgggctaa |
13440989 |
T |
|
| Q |
219 |
tgacttggcccacaagcttcaaatcccgaatctaacgtttaatggatcgtctctctttgctgtctcgatctttcattcccttcgaacaaacaatttactt |
318 |
Q |
| |
|
||||||||| || |||||||| ||||| || || || || ||||||| ||| || ||| | ||||| || | | ||||| | | ||||||| |||||| |
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|
| T |
13440988 |
tgacttggcgcataagcttcagatcccaaacctcacattcaatggattgtcactttttaccgtctctctcgtggaatccctccaagcaaacaacttactt |
13440889 |
T |
|
| Q |
319 |
catacagatgctgatgctgattcagattcaagttcatatgtcgttccaaatcttcatcat |
378 |
Q |
| |
|
||| | ||| || || |||||| ||||||||||| | ||| ||||||||| ||| |||| |
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|
| T |
13440888 |
cattctgatactaattctgatttggattcaagttcctttgttgttccaaattttcctcat |
13440829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 25 - 245
Target Start/End: Complemental strand, 13449345 - 13449125
Alignment:
| Q |
25 |
cttcacaccgttgaattcccctatcaacaagtcgacctccctaaaggcgttgagtctatgacctccaccactgaccctatcaccacttggaagatccata |
124 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||||||| |||| |||| |||||| | || || || ||||| | |||||||||||||||||||| |
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|
| T |
13449345 |
cttcacaccgttgacttcccctcccaacaagtcggcctccctgaaggtattgaatctatgtcttcaactacggaccccaccaccacttggaagatccata |
13449246 |
T |
|
| Q |
125 |
atggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgcattctcatgggctaatgactt |
224 |
Q |
| |
|
|||||| |||||||| || ||||| ||||||||||| ||||||| |||||||||||||||| || | || ||| | | | |||||| ||||||||| |
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| T |
13449245 |
ctggcgcgatgctccttaaagaacctattggggatttcattgagaatgatccaccggattgtatcatctccgactccacgtacccatgggttaatgactt |
13449146 |
T |
|
| Q |
225 |
ggcccacaagcttcaaatccc |
245 |
Q |
| |
|
|||| | ||| |||| ||||| |
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| T |
13449145 |
ggccgataagtttcagatccc |
13449125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 13462365 - 13462229
Alignment:
| Q |
26 |
ttcacaccgttgaattcccctatcaacaagtcgacctccctaaaggcgttgagtctatgacctccaccactgaccctatcaccacttggaagatccataa |
125 |
Q |
| |
|
|||||||| | |||||||||| |||||||| | ||| ||| | ||| |||| |||||| | |||||||| ||| | | ||| |||||||||||||| | |
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|
| T |
13462365 |
ttcacaccatcgaattcccctcccaacaagttggccttcctgatggcattgaatctatgtcttccaccaccgactccaccacatcttggaagatccatca |
13462266 |
T |
|
| Q |
126 |
tggcgcaatgctcctcaatgaaccggttggggatttc |
162 |
Q |
| |
|
|||||||||||||||| ||| ||| ||| ||||||| |
|
|
| T |
13462265 |
tggcgcaatgctcctccatggacccattgaggatttc |
13462229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 3416727 - 3416953
Alignment:
| Q |
19 |
ctccgccttcacaccgttgaattcccctatcaacaagtcgacctccctaaaggcgttgagtctatgacctccaccactgaccctatcaccacttggaaga |
118 |
Q |
| |
|
||||||||||||||||| || || |||| ||||||| | ||||||||| ||||| |||| ||||| |||||||||| |||| ||||||||||||||| |
|
|
| T |
3416727 |
ctccgccttcacaccgtcgactttccctttcaacaaatggacctccctgaaggcattgaatctatatcctccaccaccgacctcgtcaccacttggaaga |
3416826 |
T |
|
| Q |
119 |
tccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgcattctcatgggctaa |
218 |
Q |
| |
|
|| | |||||||||||||||||| || ||| ||| ||||||| || | || ||||||| |||||||| || | || || |||| | |||||| ||| |
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|
| T |
3416827 |
tcaacaatggcgcaatgctcctccatcgacccattgaggatttcattaaaaacgatccaccagattgtatcatctccgactctgcatacccatgggttaa |
3416926 |
T |
|
| Q |
219 |
tgacttggcccacaagcttcaaatccc |
245 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
3416927 |
tgacttggcccagaagcttcaaatccc |
3416953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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