View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16804_high_12 (Length: 406)
Name: NF16804_high_12
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16804_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 43 - 388
Target Start/End: Original strand, 40326493 - 40326838
Alignment:
| Q |
43 |
gcaatatgaatctctcaagtatgtacctgtatgatgcctttcacacgccaaactgagtgtttcataaccacaatctgtgaatcataggggtgctttgacc |
142 |
Q |
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| T |
40326493 |
gcaatatgaatctctcaagtatgtacctgtatgatgcctttcacacgccaaactgagtgtttcataaccacaatctgtgaatcataggggtgctttgacc |
40326592 |
T |
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| Q |
143 |
gaacatcatctctctcagtttctatattaacattgtgttctgtagataactgaacagctaatgtttcccttgttcccctcctcactcttcctaacacagc |
242 |
Q |
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| T |
40326593 |
gaacatcatctctctcagtttctatattaacattgtgttctgtagataactgaacggctaatgtttcccttgttcccctcctcactcttcctaacacagc |
40326692 |
T |
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| Q |
243 |
ccttgagtctcctgcatttgcaatatacagcttaccgttgcaaattatccccgccaaacaacatgtaccagcagatgctatctgtggtttgttttgccat |
342 |
Q |
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| T |
40326693 |
ccttgagtctcctgcatttgcaatatacagcataccgttgcaaattatccccgccaaacaacatgtaccagcagatgctatctgtggtttgttttgccat |
40326792 |
T |
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| Q |
343 |
tgcttcttcactagagacaaaaaatcatcatctgttgcagaaaatg |
388 |
Q |
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| T |
40326793 |
tgcttcttcactagagacagaaaatcatcatctgttgcagaaaatg |
40326838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 64 - 329
Target Start/End: Original strand, 28938748 - 28939013
Alignment:
| Q |
64 |
tgtacctgtatgatgcctttcacacgccaaactgagtgtttcataaccacaatctgtgaatcataggggtgctttgaccgaacatcatctctctcagttt |
163 |
Q |
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| T |
28938748 |
tgtacctgtatgaggcctttgacgcgccaaacattgtgtctcataaccacaatttgtgaatcataagggtgtcttaatctaagttcatctctcactcttt |
28938847 |
T |
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| Q |
164 |
ctatattaacattgtgttctgtagataactgaacagctaatgtttcccttgttcccctcctcactcttcctaacacagcccttgagtctcctgcatttgc |
263 |
Q |
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| | |||||||| ||||||| |||||| || | ||| |||||||||||||| ||||| | |||||||||||| |||||||||| || | |||||| |
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| T |
28938848 |
caaggttaacattatgttctgcagataattgtatggctgatgtttcccttgttgccctctctagtcttcctaacaccacccttgagtcaccagaatttgc |
28938947 |
T |
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| Q |
264 |
aatatacagcttaccgttgcaaattatccccgccaaacaacatgtaccagcagatgctatctgtgg |
329 |
Q |
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| T |
28938948 |
aatatataccagtccattgcaaattatccccaccaaacaacaagtacctgctgatgcaatatgtgg |
28939013 |
T |
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