View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16804_high_15 (Length: 319)
Name: NF16804_high_15
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16804_high_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 34927880 - 34928184
Alignment:
| Q |
13 |
aatatacaataagaaaaacgattttattcctccaacaactttttaaaaaccgatcacgtccataagtattcatcaagacaggnnnnnnnntgtattatcc |
112 |
Q |
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| T |
34927880 |
aatatacaataagaaaaacaattttattcctccaacaactttttaaaaaccaatcacgtccataagtatccatcgagacaggaaaaaaa-tgtattatcc |
34927978 |
T |
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| Q |
113 |
cgtccaaatgtctacttctggacggggtcgattttaaagaatcatgagagtaagaaaatggttcctatataatatgatgtgggtgtagagaacataaaga |
212 |
Q |
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| T |
34927979 |
catccaaatgtctacttctggacggggtcgattttaaagaatcatgagagtaagaaaatggttcctatataatatgatatgggtgcagagaacataaaga |
34928078 |
T |
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| Q |
213 |
tgcagggggtcccaagtatataagatatgcaaagaagatgtacgaccaacattctaattcaaaaatgtaatcaagaatggtaacccatggccctgcccat |
312 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34928079 |
tgca-ggggtcccaagtatataagatatgcaaagaagatgtacgaccaacattctaattcaaaaatgtaatcaagaatggtaacccatggccctgcccat |
34928177 |
T |
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| Q |
313 |
tggtggt |
319 |
Q |
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||||||| |
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| T |
34928178 |
tggtggt |
34928184 |
T |
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