View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16804_high_18 (Length: 303)

Name: NF16804_high_18
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16804_high_18
NF16804_high_18
[»] chr5 (3 HSPs)
chr5 (48-283)||(37089795-37090029)
chr5 (1-42)||(37091063-37091104)
chr5 (1-43)||(32249680-32249722)
[»] chr7 (7 HSPs)
chr7 (1-43)||(14602802-14602844)
chr7 (1-43)||(35456281-35456323)
chr7 (1-43)||(2411788-2411830)
chr7 (1-43)||(39342191-39342233)
chr7 (1-43)||(45984810-45984852)
chr7 (1-43)||(45989170-45989212)
chr7 (2-43)||(42817000-42817041)
[»] scaffold0301 (1 HSPs)
scaffold0301 (1-43)||(7628-7670)
[»] chr8 (5 HSPs)
chr8 (1-43)||(14714-14756)
chr8 (1-43)||(29256944-29256986)
chr8 (1-43)||(31976696-31976738)
chr8 (1-43)||(31980077-31980119)
chr8 (1-43)||(44346252-44346294)
[»] chr6 (1 HSPs)
chr6 (1-43)||(8475605-8475647)
[»] chr4 (4 HSPs)
chr4 (1-43)||(2126313-2126355)
chr4 (1-43)||(26534963-26535005)
chr4 (1-43)||(35470599-35470641)
chr4 (1-43)||(47108695-47108737)
[»] chr3 (3 HSPs)
chr3 (1-43)||(28181829-28181871)
chr3 (1-43)||(34089052-34089094)
chr3 (1-43)||(48948058-48948100)
[»] chr2 (3 HSPs)
chr2 (1-43)||(769508-769550)
chr2 (1-43)||(33188820-33188862)
chr2 (1-43)||(44256110-44256152)
[»] chr1 (2 HSPs)
chr1 (1-43)||(946856-946898)
chr1 (1-43)||(15467517-15467559)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 48 - 283
Target Start/End: Original strand, 37089795 - 37090029
Alignment:
Q  48 agtaatgacaatgtagagaaagagcttgtgattgtgaatgaagtcaaaattggtgttgatgggaaggaagaagcataaa-aattattttgtttgccatta 146  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||  |||||||||||||||||| ||| | ||| |||||||||| |||||    
T  37089795 agtaatgacaatgtagagaaagagcttgtgcttgtgaatgaagtcaaagttggaattgatgggaaggaagaagtatagagaatcattttgtttggcatta 37089894  T
Q  147 tagattgtgtgcaggaggtaaatataatgcctcatgttcgttgattttgagtgatttgtagagcattgtttttaacaaggtgattgttatgtactattaa 246  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||    
T  37089895 tagattgtg--caggaggtaaatataatgcctcatgtttgttgattttgagtgatttgtagaacattattttttacaagatgattgttatgtactattaa 37089992  T
Q  247 gtgttgacagatagatatttagtatgtgtttggtttg 283  Q
    ||||||||| |||||||||||||||||||||||||||    
T  37089993 gtgttgacaaatagatatttagtatgtgtttggtttg 37090029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37091063 - 37091104
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaa 42  Q
    ||||||||| ||||||||| ||||||||||||||||||||||    
T  37091063 taattgaatcattttaattacctagagttctaaattctttaa 37091104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32249722 - 32249680
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  32249722 taattgaatcatttaaattgcctagaattctaaattctttaaa 32249680  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 14602844 - 14602802
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    |||||||||||||| ||||||||||| ||||||||||||||||    
T  14602844 taattgaattatttaaattgcctagaattctaaattctttaaa 14602802  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35456281 - 35456323
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    |||||||||||||| ||||||||||| ||||||||||||||||    
T  35456281 taattgaattatttaaattgcctagaattctaaattctttaaa 35456323  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2411788 - 2411830
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  2411788 taattgaatcatttaaattgcctagaattctaaattctttaaa 2411830  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39342233 - 39342191
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  39342233 taattgaatcatttaaattgcctagaattctaaattctttaaa 39342191  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 45984810 - 45984852
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  45984810 taattgaatcatttaaattgcctagaattctaaattctttaaa 45984852  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 45989170 - 45989212
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  45989170 taattgaatcatttaaattgcctagaattctaaattctttaaa 45989212  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 42817000 - 42817041
Alignment:
Q  2 aattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    |||||||| |||| ||||||||||| ||||||||||||||||    
T  42817000 aattgaatcatttaaattgcctagaattctaaattctttaaa 42817041  T

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Target: scaffold0301 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7628 - 7670
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  7628 taattgaatcatttaaattgcctagaattctaaattctttaaa 7670  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14714 - 14756
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  14714 taattgaatcatttaaattgcctagaattctaaattctttaaa 14756  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 29256986 - 29256944
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  29256986 taattgaatcatttaaattgcctagaattctaaattctttaaa 29256944  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31976738 - 31976696
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  31976738 taattgaatcatttaaattgcctagaattctaaattctttaaa 31976696  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31980119 - 31980077
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  31980119 taattgaatcatttaaattgcctagaattctaaattctttaaa 31980077  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 44346294 - 44346252
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  44346294 taattgaatcatttaaattgcctagaattctaaattctttaaa 44346252  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 8475605 - 8475647
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  8475605 taattgaatcatttaaattgcctagaattctaaattctttaaa 8475647  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2126313 - 2126355
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  2126313 taattgaatcatttaaattgcctagaattctaaattctttaaa 2126355  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26534963 - 26535005
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  26534963 taattgaatcatttaaattgcctagaattctaaattctttaaa 26535005  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35470599 - 35470641
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  35470599 taattgaatcatttaaattgcctagaattctaaattctttaaa 35470641  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 47108695 - 47108737
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  47108695 taattgaatcatttaaattgcctagaattctaaattctttaaa 47108737  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28181871 - 28181829
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  28181871 taattgaatcatttaaattgcctagaattctaaattctttaaa 28181829  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34089052 - 34089094
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  34089052 taattgaatcatttaaattgcctagaattctaaattctttaaa 34089094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 48948058 - 48948100
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  48948058 taattgaatcatttaaattgcctagaattctaaattctttaaa 48948100  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 769508 - 769550
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  769508 taattgaatcatttaaattgcctagaattctaaattctttaaa 769550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33188862 - 33188820
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  33188862 taattgaatcatttaaattgcctagaattctaaattctttaaa 33188820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 44256110 - 44256152
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  44256110 taattgaatcatttaaattgcctagaattctaaattctttaaa 44256152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 946856 - 946898
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  946856 taattgaatcatttaaattgcctagaattctaaattctttaaa 946898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15467559 - 15467517
Alignment:
Q  1 taattgaattattttaattgcctagagttctaaattctttaaa 43  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  15467559 taattgaatcatttaaattgcctagaattctaaattctttaaa 15467517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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