View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16804_high_2 (Length: 590)
Name: NF16804_high_2
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16804_high_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 560; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Complemental strand, 25527485 - 25526922
Alignment:
| Q |
1 |
tgatgcatctatcaaaccctcactggttacctatcagattatcaccaaatgtatgatcaatgctggtcgtattgaggacgccagtgacatttggtttgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527485 |
tgatgcatctatcaaaccctcactggttacctatcagattatcaccaaatgtatgatcaatgctggtcgtattgaggacgccagtgacatttggtttgag |
25527386 |
T |
|
| Q |
101 |
atgttattagactcgggtcataccgattcctcggtgtataataatctgacattggcttgttctcaactgggaaatttggataaggctaatgagtttattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25527385 |
atgttattagactcgggtcataccgattcctcggtgtataataatctgacattggcttgttctcaactgggaaatttggataaggctaatgagtttattg |
25527286 |
T |
|
| Q |
201 |
atgagcttaagataaggtgtccatattaccaccatggtgttgtgagtgccacttacatgaattggtttcttaagcaaggaagagataaggacgccatgga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25527285 |
atgagcttaagataaggtgtccatattaccaccatggtgttgtgagtgccacttacatgaattggtttcttaagcaaggaagagataaggacgccatgga |
25527186 |
T |
|
| Q |
301 |
gtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527185 |
gtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggct |
25527086 |
T |
|
| Q |
401 |
tgggacttgtttcatgacatgttagacaatcacacgccttccacttttcatgatgtcgactctgacacttttactttgatggtcgaggaatgcttgaagc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25527085 |
tgggacttgtttcatgacatgttagacaatcacacgccttccacttttcatggtgtcgactctgacacttttactttgatggtcgaggaatgcttgaagc |
25526986 |
T |
|
| Q |
501 |
tcggtaaggttgatgaagcccttgcaactttgaagaaagttggaaccaaacctgattctaagcc |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25526985 |
tcggtaaggttgatgaagcccttgcaactttgaagaaagttggaaccaaacctgattctaagcc |
25526922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 2 - 560
Target Start/End: Complemental strand, 25535513 - 25534958
Alignment:
| Q |
2 |
gatgcatctatcaaaccctcactggttacctatcagattatcaccaaatgtatgatcaatgctggtcgtattgaggacgccagtgacatttggtttgaga |
101 |
Q |
| |
|
|||||||||||||||||||||| ||||| || | ||||||||||||||| |||||| |||||||||||||||||| ||| ||||||| | | || ||| |
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|
| T |
25535513 |
gatgcatctatcaaaccctcacccgttacttaccgcattatcaccaaatgtttgatcagtgctggtcgtattgaggatgcccgtgacatcttggttaaga |
25535414 |
T |
|
| Q |
102 |
tgttattagactcgggtcataccgattcctcggtgtataataatctgacattggcttgttctcaactgggaaatttggataaggctaatgagtttattga |
201 |
Q |
| |
|
|||||| || |||| ||| | |||| | | |||||| |||| | | || |||||| ||||||||||||| | ||||| ||||||||| ||||||| |
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| T |
25535413 |
tgttat---acacgggccatgcggatttcactgtgtatgctaatatcatatctgcttgtattcaactgggaaatgttgataaagctaatgagcttattga |
25535317 |
T |
|
| Q |
202 |
tgagcttaagataaggtgtccatattaccaccatggtgttgtgagtgccacttacatgaattggtttcttaagcaaggaagagataaggacgccatggag |
301 |
Q |
| |
|
||||||||||| ||||||| |||| || ||| | |||||||| |||||| || |||||||| || |||||| |||||||||||| || |||||| |
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|
| T |
25535316 |
tgagcttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggttttttgagcaagaaagagataaggaggctatggag |
25535217 |
T |
|
| Q |
302 |
tgttataagtctttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggctt |
401 |
Q |
| |
|
|||||||| || ||||||||||||||||||| |||||||||| ||||| || || | ||||||||| ||||||||| || |||||| ||||| ||||||| |
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|
| T |
25535216 |
tgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaatatgctcttggagattttgctcaggtttggaaaaaaaaccgaggctt |
25535117 |
T |
|
| Q |
402 |
gggacttgtttcatgacatgttagacaatcacacgccttccacttttcatgatgtcgactctgacacttttactttgatggtcgaggaatgcttgaagct |
501 |
Q |
| |
|
||||||||||||||| ||||||||||||||| || ||| |||||||||||| |||| ||||||||||||||| |||||||||||| |||||||||||||| |
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|
| T |
25535116 |
gggacttgtttcatggcatgttagacaatcatacacctcccacttttcatgctgtcaactctgacacttttattttgatggtcgatgaatgcttgaagct |
25535017 |
T |
|
| Q |
502 |
cggtaaggttgatgaagcccttgcaactttgaagaaagttggaaccaaacctgattcta |
560 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
25535016 |
tggtaagattgatgaagcccttgcaactttgaagaaagttggaaccaagcctgattcta |
25534958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 172 - 546
Target Start/End: Original strand, 25515099 - 25515476
Alignment:
| Q |
172 |
aaatttggataaggctaatgagtttattgatgagcttaagataaggtgtccatattaccaccatggtgttgtgagtgccacttacatgaattggtttctt |
271 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| ||||||| ||||||| |||| || | || ||||||||||||||||| ||| | |||| || |
|
|
| T |
25515099 |
aaattttgataaggctaatgagcttattgatgaccttaagaggtggtgtccgaattattacaacggcgttgtgagtgccacttatatgcagtggtgcttt |
25515198 |
T |
|
| Q |
272 |
aagcaaggaagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatg---agacctgaaactggcgatgttctcttggagg |
368 |
Q |
| |
|
||| ||||||| ||||| || |||||||||||||| || ||||||||||||||||||| |||| |||||||||||| || || |||||||| || |
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|
| T |
25515199 |
gtacaaagaagagagaaggaggctatggagtgttataactccttattgaaccgcaagtgtacgatgatgagacctgaaacttgcaatattctcttgacgg |
25515298 |
T |
|
| Q |
369 |
ttttgctcaagtatggaaagaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacgccttccacttttcatgatgtcgactctgacac |
468 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||| |||| |
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|
| T |
25515299 |
ttttgctctcgtctggaaaaaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacacctcccacttttcatggtgttgactctaacac |
25515398 |
T |
|
| Q |
469 |
ttttactttgatggtcgaggaatgcttgaagctcggtaaggttgatgaagcccttgcaactttgaagaaagttggaac |
546 |
Q |
| |
|
||||| | |||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25515399 |
ttttattgtgatggtcaatgaatgcttcaagcttggtaaggttgatgaagcccttgcaactttgaagaaagttggaac |
25515476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 25514928 - 25515033
Alignment:
| Q |
2 |
gatgcatctatcaaaccctcactggttacctatcagattatcaccaaatgtatgatcaatgctggtcgtattgaggacgccagtgacatttggtttgaga |
101 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| ||||||||||||||| || ||| ||||||| | |||| ||| |
|
|
| T |
25514928 |
gatgcatctatcaaaccctcaccggttacctatcagattatcaccaaagctttgatcagtgctggtcgtattgaagatgcccgtgacatcttgtttaaga |
25515027 |
T |
|
| Q |
102 |
tgttat |
107 |
Q |
| |
|
|||||| |
|
|
| T |
25515028 |
tgttat |
25515033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 237 - 375
Target Start/End: Complemental strand, 25538274 - 25538136
Alignment:
| Q |
237 |
gtgttgtgagtgccacttacatgaattggtttcttaagcaaggaagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggat |
336 |
Q |
| |
|
||||||||| |||||| | |||| | |||||| ||||| | |||||||| ||||| |||||||||| |||| | || |||||||||| ||||| |||||| |
|
|
| T |
25538274 |
gtgttgtgaatgccacattcatggaatggttttttaaggagggaagagaaaaggaagccatggagtcttatgactccttattgaaccacaagtttaggat |
25538175 |
T |
|
| Q |
337 |
gagacctgaaactggcgatgttctcttggaggttttgct |
375 |
Q |
| |
|
||||||||||||| || ||| ||| |||||||| ||||| |
|
|
| T |
25538174 |
gagacctgaaacttgcaatgctcttttggaggtgttgct |
25538136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 173 - 549
Target Start/End: Original strand, 43223700 - 43224073
Alignment:
| Q |
173 |
aatttggataaggctaatgagtttattgatgagcttaagataaggtgtccatattaccaccatggtgttgtgagtgccacttacatgaattggtttctta |
272 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| ||||||| ||| | ||||||||| | ||| ||||||||| | |||||| ||| |
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|
| T |
43223700 |
aatttggataaggctaatgagctttttgatgagcttaagggaaggtgtagtgtttatga---tggtgttgtaaatgctacttacatggaatggtttttta |
43223796 |
T |
|
| Q |
273 |
agcaaggaagagataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttctcttggaggtttt |
372 |
Q |
| |
|
|||| |||||||||||||| || ||||| | ||||||||||| || | ||| ||| |||||||| ||||| |||| | ||||||| ||||||||||| |
|
|
| T |
43223797 |
agcagggaagagataaggaggctatggattcgtataagtctttcatggatcgcgagtttaggatgacacctgcaacttgtaatgttctgttggaggtttt |
43223896 |
T |
|
| Q |
373 |
gctcaagtatggaaagaaaactgaggcttgggacttgtttcatgacatgttagacaatcacacgccttccacttttcatgatgtcgactctgacactttt |
472 |
Q |
| |
|
||| ||| ||| ||||||| ||||||||| | |||||| || | ||||| || |||||||| ||| | | |||||| | ||| | || || |||||| |
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|
| T |
43223897 |
gcttaagcatgataagaaaaaggaggcttggaaattgtttgatcagatgttggataatcacactcctcctaattttcaagctgttaattccgatactttt |
43223996 |
T |
|
| Q |
473 |
actttgatggtcgaggaatgcttgaagctcggtaaggttgatgaagcccttgcaactttgaagaaagttggaaccaa |
549 |
Q |
| |
|
| | | ||||| | || ||||| |||| |||||| ||||||||||||||| ||||| | ||| ||||| ||||| |
|
|
| T |
43223997 |
aatatcatggttaatgagtgctttaagcatggtaagtttgatgaagcccttgatacttttaggaaggttggtaccaa |
43224073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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