View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16804_high_23 (Length: 269)

Name: NF16804_high_23
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16804_high_23
NF16804_high_23
[»] chr3 (11 HSPs)
chr3 (19-253)||(20994819-20995053)
chr3 (19-253)||(20981660-20981894)
chr3 (30-227)||(20977464-20977664)
chr3 (21-196)||(20949471-20949649)
chr3 (48-191)||(20948807-20948953)
chr3 (34-107)||(45856786-45856859)
chr3 (34-123)||(2996370-2996459)
chr3 (34-129)||(45870364-45870459)
chr3 (46-107)||(45881814-45881875)
chr3 (151-194)||(45856699-45856742)
chr3 (78-123)||(45914200-45914245)
[»] chr4 (1 HSPs)
chr4 (48-192)||(3978225-3978369)
[»] chr7 (2 HSPs)
chr7 (43-107)||(44501347-44501411)
chr7 (157-257)||(44501197-44501297)
[»] chr5 (1 HSPs)
chr5 (157-201)||(7976615-7976659)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 20995053 - 20994819
Alignment:
Q  19 acattgcataatagagactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcagtctcttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20995053 acattgcataatagagactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcagtctcttg 20994954  T
Q  119 attttcagcgtcataatggccgctttgtgcctcaacttaaaaagattgtgaattacgctatttcacacaatgtccagcagttacaactttgtgtcacttg 218  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20994953 attttcagcgtcataatggccgctttgagcctcaacttaaaaagattgtgaattacgctatttcacacaatgtccagcagttacaactttgtgtcacttg 20994854  T
Q  219 tgacattgcgcaaattcctcctagcttattttcat 253  Q
    |||||||||||||||||||| ||||||||||||||    
T  20994853 tgacattgcgcaaattcctcatagcttattttcat 20994819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 20981894 - 20981660
Alignment:
Q  19 acattgcataatagagactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcagtctcttg 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20981894 acattgcataatagagactttcgtaatttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcagtctcttg 20981795  T
Q  119 attttcagcgtcataatggccgctttgtgcctcaacttaaaaagattgtgaattacgctatttcacacaatgtccagcagttacaactttgtgtcacttg 218  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  20981794 attttcagcgtcataatggccgctttgagcctcaacttaaaaagattgtgaattacgctatttcacacaatgtccagcggttacaactttgtgtcaattg 20981695  T
Q  219 tgacattgcgcaaattcctcctagcttattttcat 253  Q
    |||||||||||||||||||| |||| |||||||||    
T  20981694 tgacattgcgcaaattcctcatagcctattttcat 20981660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 227
Target Start/End: Original strand, 20977464 - 20977664
Alignment:
Q  30 tagagactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcagtctcttgattttcagcgt 129  Q
    |||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| ||| || |  || ||||||||||| ||||     
T  20977464 tagagactttagaacttacaagatattcaccaaattcgtgtctaagattttatctcttcgcgattcctccatcacattagaggctcttgattttaagcgc 20977563  T
Q  130 cataatggccgctttgtgcctca---acttaaaaagattgtgaattacgctatttcacacaatgtccagcagttacaactttgtgtcacttgtgacattg 226  Q
    |||| ||| | ||| | ||||||   |||| ||| |||||||||||||||||||  ||||||||||||||  |||| ||||  ||||||| |||||||||    
T  20977564 catattggtcccttagagcctcacatacttgaaaggattgtgaattacgctattaaacacaatgtccagcgattacgacttaatgtcactagtgacattg 20977663  T
Q  227 c 227  Q
    |    
T  20977664 c 20977664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 20949471 - 20949649
Alignment:
Q  21 attgcataatagagactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcagtctcttgat 120  Q
    |||||||  |||||||||| | |||| |||||||||||||| |||||||||||| |||||||||||| |||||||||||||| || |  |  ||||||||    
T  20949471 attgcattgtagagactttagaacttacaagatattcaccaaattcgtgtctaaaattttatctctttgtgattcctctatcacattataagctcttgat 20949570  T
Q  121 tttcagcgtcataatggccgctttgtgcctca---acttaaaaagattgtgaattacgctatttcacacaatgtccagc 196  Q
    ||| ||| ||||| ||| || || | ||||||   ||| |||| |||||||||||||||||||  ||||||||||||||    
T  20949571 tttaagcatcatattggtcgtttagagcctcacatactcaaaaggattgtgaattacgctattaaacacaatgtccagc 20949649  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 191
Target Start/End: Original strand, 20948807 - 20948953
Alignment:
Q  48 caagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcagtctcttgattttcagcgtcataatggccgctttgtg 147  Q
    ||||||||||||||  || ||||||||||||||||||||||||||| |||||||| || | ||  ||||||||||| ||||||||| ||  ||||| | |    
T  20948807 caagatattcaccaagtttgtgtctaagattttatctcttcgtgatccctctatcgcaatacacactcttgattttaagcgtcatattgttcgcttagag 20948906  T
Q  148 cctca---acttaaaaagattgtgaattacgctatttcacacaatgt 191  Q
    |||||   |||||||| |||||||||||||| ||||  |||||||||    
T  20948907 cctcacatacttaaaaggattgtgaattacggtattaaacacaatgt 20948953  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 45856859 - 45856786
Alignment:
Q  34 gactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcact 107  Q
    |||||||| |||||||||||||||||||  || ||||||||| |||||||||||||||||||||||||| ||||    
T  45856859 gactttcgaactttcaagatattcaccaactttgtgtctaaggttttatctcttcgtgattcctctatcgcact 45856786  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 2996459 - 2996370
Alignment:
Q  34 gactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcagtctcttgatttt 123  Q
    |||||||| |||| ||||| |||||||| ||| ||||||||| ||||||||||| | ||||||||||| ||| | ||| |||| ||||||    
T  2996459 gactttcgaacttacaagaaattcaccaaatttgtgtctaaggttttatctctttgcgattcctctatttcattgcagactctcgatttt 2996370  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 45870459 - 45870364
Alignment:
Q  34 gactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcagtctcttgattttcagcgt 129  Q
    |||||||| ||||  ||||||||||||| ||| || |||| | |||||||||| || ||||||||||||||||| |||   ||||||||| |||||    
T  45870459 gactttcgaacttataagatattcaccagatttgtttctagggttttatctctccgggattcctctatctcactgcagaaacttgattttaagcgt 45870364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 45881875 - 45881814
Alignment:
Q  46 ttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcact 107  Q
    |||||||||||||||| ||| ||||| ||| ||||||||||  |||||||||||||| ||||    
T  45881875 ttcaagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacact 45881814  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 45856742 - 45856699
Alignment:
Q  151 caacttaaaaagattgtgaattacgctatttcacacaatgtcca 194  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||    
T  45856742 caactcaaaaaggttgtgaattatgctatttcacacaatgtcca 45856699  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 45914245 - 45914200
Alignment:
Q  78 tttatctcttcgtgattcctctatctcacttcagtctcttgatttt 123  Q
    |||||||||||||||||||||||| || || ||| |||||||||||    
T  45914245 tttatctcttcgtgattcctctatatcgctgcaggctcttgatttt 45914200  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 192
Target Start/End: Original strand, 3978225 - 3978369
Alignment:
Q  48 caagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcagtctcttgattttcagcgtcataatggccgctttgtg 147  Q
    ||||| |||||||| ||| ||||||||  |||||| |||||| |||||||||||| |||| ||  ||||||||||| |||||  ||| || ||||||| |    
T  3978225 caagaaattcaccagattagtgtctaaagttttatttcttcgcgattcctctatcgcactacaagctcttgattttaagcgtagtaacggtcgctttgag 3978324  T
Q  148 cctcaacttaaaaagattgtgaattacgctatttcacacaatgtc 192  Q
    ||| ||||  |||||||||||||||| ||| ||||||||||||||    
T  3978325 cctaaactcgaaaagattgtgaattatgctctttcacacaatgtc 3978369  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 44501411 - 44501347
Alignment:
Q  43 actttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcact 107  Q
    ||||||||||||||||  | ||||||||||||| ||||||||||||  |||||||||||||||||    
T  44501411 actttcaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcact 44501347  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 44501297 - 44501197
Alignment:
Q  157 aaaaagattgtgaattacgctatttcacacaatgtccagcagttacaactttgtgtcacttgtgacattgcgcaaattcctcctagcttattttcatctc 256  Q
    |||| |||||||||||  |||||||||||||  ||||||| || |  |||| |||||  |  ||||| ||| |||||||| |||||| ||||||||||||    
T  44501297 aaaaggattgtgaattgtgctatttcacacatagtccagcggtcaggacttagtgtccatgctgacaatgcacaaattccgcctagcatattttcatctc 44501198  T
Q  257 a 257  Q
    |    
T  44501197 a 44501197  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 7976659 - 7976615
Alignment:
Q  157 aaaaagattgtgaattacgctatttcacacaatgtccagcagtta 201  Q
    |||| |||||||||||| |||||||||||||||||||||| ||||    
T  7976659 aaaaggattgtgaattatgctatttcacacaatgtccagcggtta 7976615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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