View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16804_high_3 (Length: 583)
Name: NF16804_high_3
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16804_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 11 - 568
Target Start/End: Original strand, 47701291 - 47701848
Alignment:
| Q |
11 |
cacagaggtcattgaatgagaaacaacaggagaatcaagagttgctcattagatgtattgcacaacatctaggctttgctgggaatagaccaattgctgc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47701291 |
cacagaggtcattgaatgagaaacaacaggagaatcaagagttgctcattagatgtattgcacaacatctaggctttgctgggaatagaccaattgctgc |
47701390 |
T |
|
| Q |
111 |
ctgtatcatatacaaatgcctcttgcattggagatcatttgaagttgagcgtacaagtgtgtttgatcgtataatccaaactataggccatgcaattgag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47701391 |
ctgtatcatatacaaatgcctcttgcattggagatcatttgaagttgagcgtacaagtgtgtttgatcgtataatccaaactataggccatgcaattgag |
47701490 |
T |
|
| Q |
211 |
gtttaaaatgctcaactttcacgtgatagttctctttccttctcacactcctttctcaacaaatttattttcactaaaatannnnnnncggacttcagac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47701491 |
gtttaaaatgctcaactttcacgtgatagttctctttccttctcacactcctttctcaacaaatttattttcactaaaatatatttttcggacttcagac |
47701590 |
T |
|
| Q |
311 |
ccaggagaacaacgacatcttggcttattggttatccaatgcttctacacttctcttgttgctccagcgcacacttaaagcgagtggtgctgctggaatg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47701591 |
ccaggagaacaacgacatcttggcttattggttatccaatgcttctacacttctcttgttgctccagcgcacacttaaagcgagtggtgctgctggaatg |
47701690 |
T |
|
| Q |
411 |
gctcctcaacgccgccgttcttcctcagcaaccctgtttgggaggatgacacaagtaaatataactttctaatttgaaacgggttgattcccattgagaa |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47701691 |
gctcctcaacgccgccgttcttcctcagcaaccctgtttgggaggatgacacaagtaaatataactttctaatttgaaacgggttgattcccattgagaa |
47701790 |
T |
|
| Q |
511 |
attttccttctttaggaaagtacagtcgttcatttacccttattacagagtttccgtg |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47701791 |
attttccttctttaggaaagtacagtcgttcatttacccttattacagagtttccgtg |
47701848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 57 - 159
Target Start/End: Complemental strand, 35819494 - 35819392
Alignment:
| Q |
57 |
cattagatgtattgcacaacatctaggctttgctgggaatagaccaattgctgcctgtatcatatacaaatgcctcttgcattggagatcatttgaagtt |
156 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||| |||| |||||| || ||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35819494 |
cattagatgtattgcacaacttctagaattggctgggaacagactaattgccgcttgtatcatagacaaatgtctcttgcattggagatcatttgaagtt |
35819395 |
T |
|
| Q |
157 |
gag |
159 |
Q |
| |
|
||| |
|
|
| T |
35819394 |
gag |
35819392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 469
Target Start/End: Complemental strand, 35819155 - 35819090
Alignment:
| Q |
404 |
tggaatggctcctcaacgccgccgttcttcctcagcaaccctgtttgggaggatgacacaagtaaa |
469 |
Q |
| |
|
|||||||||||| ||| ||| | ||||||| |||||| ||||||||||||||||||| |||||||| |
|
|
| T |
35819155 |
tggaatggctccacaatgccactgttcttcatcagcagccctgtttgggaggatgactcaagtaaa |
35819090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University