View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16804_high_32 (Length: 228)
Name: NF16804_high_32
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16804_high_32 |
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| [»] scaffold0202 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0202 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 2020 - 1972
Alignment:
| Q |
159 |
ctcctaaacaagctagagggttagtccactaatgtgatattgcatatcc |
207 |
Q |
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| T |
2020 |
ctcctaaacaagctagagggttagtccactaatgtgatattgcatatcc |
1972 |
T |
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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 31093302 - 31093255
Alignment:
| Q |
160 |
tcctaaacaagctagagggttagtccactaatgtgatattgcatatcc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31093302 |
tcctaaacaagctagagggttagtccactaatgtgatattgcatatcc |
31093255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 31069 - 31021
Alignment:
| Q |
159 |
ctcctaaacaagctagagggttagtccactaatgtgatattgcatatcc |
207 |
Q |
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|||||||| ||| |||||||||||||||| | | ||||||||||||||| |
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| T |
31069 |
ctcctaaaaaaggtagagggttagtccacaactttgatattgcatatcc |
31021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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