View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16804_high_34 (Length: 218)
Name: NF16804_high_34
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16804_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 12855339 - 12855171
Alignment:
| Q |
18 |
aaaccctaaaaagtataaaagtgnnnnnnnnatgtaaaaaatttctttttggtttctttaactaatgatccgtaacactattagtatnnnnnnnncactg |
117 |
Q |
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| T |
12855339 |
aaaccctaaaaagtataaaagtgttttttttatgtaaaaaatttctttttggtttctttaactaatgatccgtaacactattagtataaaaaaaa-actg |
12855241 |
T |
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| Q |
118 |
gtgtgatatca-nnnnnnnnaaagagtgatatcctttttcttggtaattactaattgagaaatatgtgac |
186 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12855240 |
gtgtgatatcatttttttttaaagagtgatatcctttttcttggtaattactaattgagaaatatgtgac |
12855171 |
T |
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