View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16804_high_6 (Length: 490)
Name: NF16804_high_6
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16804_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 13 - 473
Target Start/End: Complemental strand, 21484041 - 21483581
Alignment:
| Q |
13 |
gagatgaattaggtgcatgtgatggtgtaagtgatgaaatgagtatggttttcttggagtggcttaaatcgaacaaagacagtgtctccgcgaatgattt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21484041 |
gagatgaattaggtgcatgtgatggtgtaagtgatgaaatgagtatggttttcttggagtggcttaaatcgaacaaagacagtgtctccgcgaatgattt |
21483942 |
T |
|
| Q |
113 |
gaggaatgtgaagcttaagaaatcgacgatcgaaagtgctgctaggagattaggtggtggaaaagaagggatgaaacaattgttgaagctcattcttgaa |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21483941 |
gaggaatgtgaagcttaagaaatcaacgattgaaagtgctgctaggagattaggtggtggaaaagaagggatgaaacaattgttgaagctcattcttgaa |
21483842 |
T |
|
| Q |
213 |
tgggttcaaactagtcatcttcacaacaaaagactcaaagaaaacgccaacacgaacacaataataccttcaaatattgttcctcaacaacaacattttc |
312 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21483841 |
tgggttcaaactagtcatcttcataacaaaagactcaaagaaaacgccaacacgaacacaataataccttcaaatattgttcctcaacaacatcattttc |
21483742 |
T |
|
| Q |
313 |
aagatccgtgtcagaaccaaaacacagcaaacacatttgcacctgaatcgaacacgtgtttcaaccaaacatcatggctagatcaaacacctctcattgt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21483741 |
aagatccgtgtcagaaccaaaacacagcaaacacatttgcacctgaatcgaacgcatgtttcaaccaaacatcatggctagatcaaacacctctcattgt |
21483642 |
T |
|
| Q |
413 |
acctccacaacaattttcacaaccaatggttggagttggcgttggatttgttgctgatcct |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21483641 |
acctccacaacaattttcacaaccaatggttggagttggagttggatttgttgctgatcct |
21483581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University