View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16804_high_8 (Length: 441)

Name: NF16804_high_8
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16804_high_8
NF16804_high_8
[»] chr6 (3 HSPs)
chr6 (12-424)||(32252976-32253385)
chr6 (244-315)||(3869703-3869774)
chr6 (218-262)||(33560440-33560484)
[»] chr5 (1 HSPs)
chr5 (243-315)||(16172980-16173052)
[»] chr1 (3 HSPs)
chr1 (248-287)||(52135158-52135197)
chr1 (244-289)||(40802193-40802238)
chr1 (216-268)||(21694498-21694550)
[»] chr8 (1 HSPs)
chr8 (247-289)||(3403631-3403673)
[»] chr2 (1 HSPs)
chr2 (231-280)||(26482135-26482184)
[»] scaffold0012 (1 HSPs)
scaffold0012 (248-312)||(240887-240951)
[»] chr4 (1 HSPs)
chr4 (259-311)||(23760783-23760835)


Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 12 - 424
Target Start/End: Original strand, 32252976 - 32253385
Alignment:
Q  12 atgaatgagttacaaaaattagtatacaatgtacattcttcaatacacctcacacacgaataggaggcctcgcgcaagtcgcgcccaacacacttatgca 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| || ||||||||||||||||||||||||    
T  32252976 atgaatgagttataaaaattagtatacaatgtacattcttcaatacacctcacacaggaatcggaggcctcgtgcgagtcgcgcccaacacacttatgca 32253075  T
Q  112 gtaagcttttgcaattgccataggcgcctcatgcaccaattttgatgccttgcgtgcctgagacagaaacatcctaaactgattttaaggcgtatttaaa 211  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  32253076 gtaagcttttgcaattgccagaggcgcctcatgcaccaattttgatgccttgcgtgcctgagacagaaacatcccaaactgattttaaggcgtaattaaa 32253175  T
Q  212 aaggtaaactaatccatccaaattggcattgaggagaatcgaacatgagacattgagatgagcaaactcaaagatctccatccaacactatcagaccaac 311  Q
    ||||||||||||||||   |||||||||  ||||||||||||||||||   | ||||| |||||||||| |||||||||| |||| |||||||| |||||    
T  32253176 aaggtaaactaatccacttaaattggcaccgaggagaatcgaacatga---aatgagaggagcaaactccaagatctccaaccaatactatcaggccaac 32253272  T
Q  312 ccaaatatgtttgttcctgaaaaacttaaagacaagatttttcatgttatgcgtgcctagctctcttaaactcacaatctcacctttattcaaaccaaac 411  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32253273 ccaaatgtgtttgttcctgaaaaacataaagacaagatttttcatgttatgcgtgcctagctctcttcaactcacaatctcacctttattcaaaccaaac 32253372  T
Q  412 cattggacataca 424  Q
    |||||||||||||    
T  32253373 cattggacataca 32253385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 315
Target Start/End: Complemental strand, 3869774 - 3869703
Alignment:
Q  244 ggagaatcgaacatgagacattgagatgagcaaactcaaagatctccatccaacactatcagaccaacccaa 315  Q
    ||||||||||||||||||| |||| |  |||| |||| |||||||| | ||||||| ||||| |||||||||    
T  3869774 ggagaatcgaacatgagaccttgatagaagcacactcgaagatctcaagccaacaccatcaggccaacccaa 3869703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 33560484 - 33560440
Alignment:
Q  218 aactaatccatccaaattggcattgaggagaatcgaacatgagac 262  Q
    |||||||||| |||||||||||   ||||||||||||||||||||    
T  33560484 aactaatccacccaaattggcaccaaggagaatcgaacatgagac 33560440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 16172980 - 16173052
Alignment:
Q  243 aggagaatcgaacatgagacattgagatgagcaaactcaaagatctccatccaacactatcagaccaacccaa 315  Q
    ||||||||||||| |||||| |||||| ||||| |||| ||| |||| | ||||||||| ||| |||||||||    
T  16172980 aggagaatcgaacctgagaccttgagaggagcacactccaaggtctcaagccaacactaccaggccaacccaa 16173052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 52135197 - 52135158
Alignment:
Q  248 aatcgaacatgagacattgagatgagcaaactcaaagatc 287  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  52135197 aatcgaacctgagacattgagatgagcaaactccaagatc 52135158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 40802193 - 40802238
Alignment:
Q  244 ggagaatcgaacatgagacattgagatgagcaaactcaaagatctc 289  Q
    |||||||| |||||||||| ||||||||||||||||| || |||||    
T  40802193 ggagaatcaaacatgagaccttgagatgagcaaactccaatatctc 40802238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 21694550 - 21694498
Alignment:
Q  216 taaactaatccatccaaattggcattgaggagaatcgaacatgagacattgag 268  Q
    ||||||| |||| ||||||||||| |||| |||||||||| |||||| |||||    
T  21694550 taaactagtccagccaaattggcactgagaagaatcgaacctgagaccttgag 21694498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 3403631 - 3403673
Alignment:
Q  247 gaatcgaacatgagacattgagatgagcaaactcaaagatctc 289  Q
    ||||||||||| |||| ||||||||||||||||| ||||||||    
T  3403631 gaatcgaacataagaccttgagatgagcaaactccaagatctc 3403673  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 280
Target Start/End: Complemental strand, 26482184 - 26482135
Alignment:
Q  231 aaattggcattgaggagaatcgaacatgagacattgagatgagcaaactc 280  Q
    ||||||||| ||||||||||||||| |||||| |||||| ||||| ||||    
T  26482184 aaattggcactgaggagaatcgaacctgagaccttgagaggagcacactc 26482135  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 240887 - 240951
Alignment:
Q  248 aatcgaacatgagacattgagatgagcaaactcaaagatctccatccaacactatcagaccaacc 312  Q
    |||| |||||||||| |||||| ||||| |||| |||||| | | ||||||| ||||||||||||    
T  240887 aatcaaacatgagaccttgagaggagcatactccaagatcccaaaccaacaccatcagaccaacc 240951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 23760835 - 23760783
Alignment:
Q  259 agacattgagatgagcaaactcaaagatctccatccaacactatcagaccaac 311  Q
    |||||||||||||| ||||||  |||||||| | ||||||||||||| |||||    
T  23760835 agacattgagatgaacaaacttcaagatctcaagccaacactatcaggccaac 23760783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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