View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16804_high_9 (Length: 416)

Name: NF16804_high_9
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16804_high_9
NF16804_high_9
[»] chr1 (26 HSPs)
chr1 (19-360)||(32971601-32971942)
chr1 (357-416)||(46281432-46281491)
chr1 (354-416)||(49569989-49570051)
chr1 (357-410)||(16263421-16263474)
chr1 (364-416)||(44723363-44723415)
chr1 (361-416)||(740972-741027)
chr1 (357-416)||(49020420-49020479)
chr1 (359-412)||(45863741-45863794)
chr1 (359-416)||(49559215-49559272)
chr1 (360-416)||(49931552-49931608)
chr1 (360-412)||(52714921-52714973)
chr1 (361-416)||(1689391-1689446)
chr1 (361-416)||(21433417-21433472)
chr1 (361-416)||(29632434-29632488)
chr1 (360-414)||(30744984-30745039)
chr1 (360-414)||(30766435-30766490)
chr1 (361-416)||(32915088-32915143)
chr1 (361-416)||(47214208-47214263)
chr1 (361-416)||(51286383-51286438)
chr1 (363-416)||(3226076-3226129)
chr1 (361-414)||(12306152-12306205)
chr1 (361-414)||(33076119-33076172)
chr1 (364-416)||(18639720-18639772)
chr1 (351-399)||(38019537-38019585)
chr1 (364-416)||(45430802-45430854)
chr1 (360-416)||(47642623-47642679)
[»] chr8 (22 HSPs)
chr8 (361-414)||(5574266-5574319)
chr8 (352-416)||(42619993-42620057)
chr8 (360-416)||(25830262-25830318)
chr8 (361-416)||(67177-67232)
chr8 (361-416)||(13970919-13970974)
chr8 (361-416)||(18651370-18651425)
chr8 (361-416)||(43285979-43286034)
chr8 (359-416)||(7795321-7795378)
chr8 (360-416)||(10344323-10344378)
chr8 (361-416)||(10644818-10644873)
chr8 (359-414)||(23754725-23754780)
chr8 (361-416)||(35792069-35792124)
chr8 (361-416)||(43715875-43715929)
chr8 (359-416)||(5924808-5924864)
chr8 (359-416)||(28756533-28756590)
chr8 (359-416)||(42786676-42786733)
chr8 (359-416)||(45406000-45406057)
chr8 (364-416)||(9549215-9549267)
chr8 (360-416)||(11114686-11114741)
chr8 (360-416)||(22767131-22767186)
chr8 (352-416)||(30943856-30943919)
chr8 (364-416)||(39031228-39031280)
[»] chr4 (26 HSPs)
chr4 (361-410)||(34757921-34757970)
chr4 (361-410)||(34759195-34759244)
chr4 (361-416)||(32696805-32696860)
chr4 (361-416)||(37514148-37514203)
chr4 (361-416)||(42815404-42815459)
chr4 (359-416)||(3078924-3078981)
chr4 (361-414)||(47015007-47015060)
chr4 (360-416)||(31469005-31469061)
chr4 (361-416)||(9472530-9472584)
chr4 (361-416)||(12241058-12241112)
chr4 (361-416)||(33820353-33820407)
chr4 (358-416)||(39881047-39881104)
chr4 (362-416)||(48649519-48649573)
chr4 (359-416)||(14443196-14443253)
chr4 (361-406)||(20760255-20760300)
chr4 (361-406)||(20766646-20766691)
chr4 (351-416)||(48722059-48722123)
chr4 (361-414)||(53654768-53654821)
chr4 (358-415)||(56271357-56271414)
chr4 (360-416)||(25523215-25523270)
chr4 (358-410)||(31995938-31995990)
chr4 (360-416)||(36123476-36123532)
chr4 (363-415)||(38715251-38715303)
chr4 (364-416)||(52430880-52430932)
chr4 (360-416)||(55996421-55996476)
chr4 (352-416)||(56557724-56557788)
[»] chr7 (13 HSPs)
chr7 (360-416)||(40854671-40854727)
chr7 (352-413)||(23844956-23845016)
chr7 (359-416)||(34108871-34108928)
chr7 (361-416)||(47012586-47012641)
chr7 (357-414)||(22638902-22638959)
chr7 (361-416)||(35586789-35586844)
chr7 (361-416)||(35822991-35823046)
chr7 (361-416)||(42584802-42584857)
chr7 (362-416)||(44496819-44496873)
chr7 (355-412)||(6522349-6522406)
chr7 (360-416)||(21037251-21037306)
chr7 (364-416)||(24532959-24533011)
chr7 (352-416)||(44184575-44184638)
[»] chr5 (23 HSPs)
chr5 (358-416)||(22098252-22098310)
chr5 (356-416)||(14321971-14322031)
chr5 (361-416)||(38493625-38493679)
chr5 (357-416)||(40829410-40829469)
chr5 (358-416)||(41175722-41175780)
chr5 (361-414)||(4088443-4088496)
chr5 (361-413)||(43214078-43214130)
chr5 (361-416)||(189719-189774)
chr5 (361-416)||(1293102-1293157)
chr5 (361-416)||(6940166-6940221)
chr5 (361-416)||(10659089-10659144)
chr5 (361-416)||(18695318-18695373)
chr5 (361-416)||(19481198-19481253)
chr5 (361-416)||(19844325-19844380)
chr5 (361-416)||(26686881-26686936)
chr5 (361-416)||(26956612-26956667)
chr5 (361-416)||(32912038-32912093)
chr5 (358-416)||(6517709-6517767)
chr5 (361-414)||(9168183-9168236)
chr5 (356-416)||(21922161-21922221)
chr5 (360-416)||(31748335-31748391)
chr5 (360-416)||(34124620-34124676)
chr5 (360-416)||(35473322-35473378)
[»] chr2 (24 HSPs)
chr2 (359-416)||(21738632-21738689)
chr2 (361-416)||(6336252-6336307)
chr2 (361-416)||(19843484-19843539)
chr2 (357-415)||(14255298-14255356)
chr2 (359-416)||(12784415-12784472)
chr2 (360-416)||(18876938-18876994)
chr2 (352-416)||(40358128-40358192)
chr2 (361-416)||(3091741-3091795)
chr2 (361-416)||(8352835-8352889)
chr2 (363-414)||(11167537-11167588)
chr2 (361-416)||(18737890-18737945)
chr2 (361-415)||(24766152-24766206)
chr2 (358-416)||(33616462-33616520)
chr2 (358-416)||(40210084-40210142)
chr2 (359-416)||(34372845-34372901)
chr2 (361-414)||(36517196-36517249)
chr2 (360-416)||(4657301-4657356)
chr2 (360-416)||(6999084-6999140)
chr2 (360-416)||(8427551-8427607)
chr2 (364-412)||(26481110-26481158)
chr2 (360-416)||(28245727-28245783)
chr2 (356-416)||(34134787-34134847)
chr2 (360-416)||(34431843-34431899)
chr2 (360-408)||(35334519-35334567)
[»] chr6 (9 HSPs)
chr6 (356-416)||(33651015-33651075)
chr6 (358-416)||(1376361-1376419)
chr6 (358-416)||(1384109-1384167)
chr6 (364-416)||(34570611-34570663)
chr6 (357-412)||(11013993-11014048)
chr6 (359-416)||(35213577-35213634)
chr6 (352-416)||(11635551-11635615)
chr6 (360-416)||(27102114-27102169)
chr6 (360-416)||(27143936-27143991)
[»] chr3 (30 HSPs)
chr3 (360-416)||(48352995-48353051)
chr3 (360-416)||(51137052-51137108)
chr3 (361-416)||(37894259-37894314)
chr3 (361-412)||(49021711-49021762)
chr3 (361-416)||(50559228-50559283)
chr3 (361-416)||(54099373-54099428)
chr3 (358-416)||(6178442-6178499)
chr3 (359-416)||(34057969-34058026)
chr3 (355-412)||(38363241-38363298)
chr3 (359-416)||(52714731-52714788)
chr3 (360-416)||(29573372-29573428)
chr3 (360-416)||(31017411-31017466)
chr3 (360-416)||(48944727-48944782)
chr3 (361-416)||(8846491-8846546)
chr3 (361-416)||(19150335-19150390)
chr3 (361-416)||(28920066-28920121)
chr3 (365-416)||(31931035-31931086)
chr3 (361-416)||(37754447-37754501)
chr3 (361-416)||(40159855-40159909)
chr3 (361-416)||(49417575-49417630)
chr3 (361-416)||(51032641-51032695)
chr3 (361-416)||(52963332-52963387)
chr3 (359-416)||(9311038-9311095)
chr3 (355-416)||(33796260-33796321)
chr3 (363-416)||(47988502-47988554)
chr3 (363-416)||(47997789-47997841)
chr3 (363-416)||(48007076-48007128)
chr3 (360-416)||(14207274-14207330)
chr3 (360-416)||(14215022-14215078)
chr3 (360-416)||(51343407-51343463)
[»] scaffold0662 (1 HSPs)
scaffold0662 (361-414)||(1146-1199)
[»] scaffold0016 (1 HSPs)
scaffold0016 (361-401)||(204476-204516)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 32971942 - 32971601
Alignment:
Q  19 taatcgacatgactacgaaaggatttcttatttgaacctattttgtgatgccacattgttgagaaataagaaggttattagtgagattttgagaggaatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32971942 taatcgacatgactacgaaaggatttcttatttgaacctatgttgtgatgccacattgttgagaaataagaaggttattagtgagattttgagaggaatt 32971843  T
Q  119 taggaggagata-tatttgacaaaatactttatannnnnnnnacttgtttatcatcacnnnnnnnnnnnnnccttttacttgtctagtttacgaatgata 217  Q
    |||||||||||| |||||||||||||||||||||        ||||||||||| |||              |||||||||||||||||||||||||||||    
T  32971842 taggaggagatagtatttgacaaaatactttatattttttttacttgtttatc-tcattttttttttttttccttttacttgtctagtttacgaatgata 32971744  T
Q  218 agctttccttcattcatagggtccaaaggacagttatacatacattgtgagataattttacacacttaaaagccgagagttctacactcttctctctact 317  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32971743 agctttccttcattcatagggtccaaaggagagttatacatacattatgagataattttacacacttaaaagccgagagttctacactcttctctctact 32971644  T
Q  318 acttaaatttaatgttatgtatctatactacacatttataaat 360  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  32971643 acttaaatttaatgttatgtatctataccacacatttataaat 32971601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 416
Target Start/End: Original strand, 46281432 - 46281491
Alignment:
Q  357 aaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||||||  |||||| |||||| ||||||||||| |||||||||    
T  46281432 aaatgagaaatgatatttgtacaactattttgtaataatttttgtgacaactttctctct 46281491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 354 - 416
Target Start/End: Original strand, 49569989 - 49570051
Alignment:
Q  354 tataaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||| ||||||||||||||||||||||  |||| |||| |||||||||||||| |||||||||    
T  49569989 tatatatgagaaatgatatttgtacatccatttcctaacaacttttgtgacaactttctctct 49570051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 357 - 410
Target Start/End: Original strand, 16263421 - 16263474
Alignment:
Q  357 aaatgagaaatgatatttgtacatatattttctaataacttttgtgacaatttt 410  Q
    |||||||||||||||||||||||  |||||||||| ||||||| ||||||||||    
T  16263421 aaatgagaaatgatatttgtacaattattttctaacaacttttatgacaatttt 16263474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 44723363 - 44723415
Alignment:
Q  364 aaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||| |||||| |||||| ||||||||||| |||||||||    
T  44723363 aaatgatatttgtacatttattttataataatttttgtgacaactttctctct 44723415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 741027 - 740972
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||| ||||  |||||||||| ||||||||||||| ||||||||||    
T  741027 gagaaatgatatttatacaactattttctaacaacttttgtgacatttttctctct 740972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 416
Target Start/End: Complemental strand, 49020479 - 49020420
Alignment:
Q  357 aaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||||||   ||||| ||| |||||||||||||||||| |||||    
T  49020479 aaatgagaaatgatatttgtacaaccattttttaacaacttttgtgacaattttttctct 49020420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 45863794 - 45863741
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttct 412  Q
    |||||||||||||||||||||  |||||| | |||| |||||||||||||||||    
T  45863794 atgagaaatgatatttgtacaattattttttgataatttttgtgacaattttct 45863741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 49559272 - 49559215
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||| ||  |||| |||| |||||||||||||| |||||||||    
T  49559272 atgagaaatgatatttgtatatccatttcctaacaacttttgtgacaactttctctct 49559215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 49931552 - 49931608
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||   ||||| ||| |||||||||||||| |||||||||    
T  49931552 tgagaaatgatatttgtacaatcattttttaacaacttttgtgacaactttctctct 49931608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 52714973 - 52714921
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttct 412  Q
    |||||||||||||||| ||||  ||||| ||| ||||||||||||||||||||    
T  52714973 tgagaaatgatatttgaacatccattttataacaacttttgtgacaattttct 52714921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 1689391 - 1689446
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||  |||||| ||| || ||||||||||| |||||||||    
T  1689391 gagaaatgatatttgtacaactattttataacaatttttgtgacaactttctctct 1689446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 21433472 - 21433417
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||   ||||| ||| |||||||||||||| |||||||||    
T  21433472 gagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctct 21433417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 29632434 - 29632488
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||| |||||| ||| || |||| ||||||||||||||||    
T  29632434 gagaaatgatatttgtacatttattttgtaacaa-ttttttgacaattttctctct 29632488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 30744984 - 30745039
Alignment:
Q  360 tgagaaatgatattt-gtacatatattttctaataacttttgtgacaattttctct 414  Q
    ||||||||||||||| |||||   |||||||||||||||||||||||| |||||||    
T  30744984 tgagaaatgatattttgtacaaccattttctaataacttttgtgacaactttctct 30745039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 30766435 - 30766490
Alignment:
Q  360 tgagaaatgatattt-gtacatatattttctaataacttttgtgacaattttctct 414  Q
    ||||||||||||||| |||||   |||||||||||||||||||||||| |||||||    
T  30766435 tgagaaatgatattttgtacaaccattttctaataacttttgtgacaactttctct 30766490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 32915143 - 32915088
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||| |||| |||||| | | |||||||||||||| |||||||||    
T  32915143 gagaaatgatatttgaacatctattttatgacaacttttgtgacaactttctctct 32915088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 47214208 - 47214263
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||| |||| |||||| | | |||||||||||||| |||||||||    
T  47214208 gagaaatgatatttgaacatctattttatgacaacttttgtgacaactttctctct 47214263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 51286438 - 51286383
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||| |||| |||||| | | |||||||||||||| |||||||||    
T  51286438 gagaaatgatatttgaacatttattttatgacaacttttgtgacaactttctctct 51286383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 416
Target Start/End: Complemental strand, 3226129 - 3226076
Alignment:
Q  363 gaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||| |||| ||||||  ||||||||||||||||| ||| |||||    
T  3226129 gaaatgatatttgaacatttattttgcaataacttttgtgacaactttttctct 3226076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 12306205 - 12306152
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctct 414  Q
    |||||||||||||||||||  |||||| ||| || |||||||| ||||||||||    
T  12306205 gagaaatgatatttgtacaattattttataacaatttttgtgataattttctct 12306152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 414
Target Start/End: Original strand, 33076119 - 33076172
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctct 414  Q
    |||||||||||||||||||   ||||||||| ||||||| |||||| |||||||    
T  33076119 gagaaatgatatttgtacaaccattttctaacaacttttatgacaactttctct 33076172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 18639772 - 18639720
Alignment:
Q  364 aaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||   ||||| | ||||||||||||| ||||||||||||    
T  18639772 aaatgatatttgtacaacgattttttgataacttttgtgataattttctctct 18639720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 38019585 - 38019537
Alignment:
Q  351 atttataaatgagaaatgatatttgtacatatattttctaataactttt 399  Q
    ||||||||||||||||||||||||||| |  |||||| | |||||||||    
T  38019585 atttataaatgagaaatgatatttgtataattattttgtgataactttt 38019537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 45430802 - 45430854
Alignment:
Q  364 aaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||  |||||| |||||| |||||||| ||||||| ||||    
T  45430802 aaatgatatttgtacaattattttttaataatttttgtgataattttcgctct 45430854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 47642679 - 47642623
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||| |||   ||||| | |||||||||||||||| |||||||||    
T  47642679 tgagaaatgatatttgaacaaccattttttgataacttttgtgacaactttctctct 47642623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 414
Target Start/End: Original strand, 5574266 - 5574319
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctct 414  Q
    ||||||||||||||||| ||||||||||||| || |||||||||||||||||||    
T  5574266 gagaaatgatatttgtatatatattttctaacaatttttgtgacaattttctct 5574319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 352 - 416
Target Start/End: Complemental strand, 42620057 - 42619993
Alignment:
Q  352 tttataaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||  ||||||||||||||||||||  ||||||||| |||||||||||||| |||||||||    
T  42620057 tttataatagagaaatgatatttgtacatccattttctaacaacttttgtgacaaatttctctct 42619993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 25830318 - 25830262
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||   ||||||||| |||||||||||||| |||||||||    
T  25830318 tgagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctct 25830262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 67232 - 67177
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||   ||||||||| |||||||||||||| |||||||||    
T  67232 gagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctct 67177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 13970919 - 13970974
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||  |||| |||| |||||||||||||| |||||||||    
T  13970919 gagaaatgatatttgtacatccatttcctaacaacttttgtgacaactttctctct 13970974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 18651370 - 18651425
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||| |||| |||||  ||| ||||||||||||||||||||||||    
T  18651370 gagaaatgatatttgaacatctatttggtaacaacttttgtgacaattttctctct 18651425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 43286034 - 43285979
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||| |||   |||||||||||||||||||||||| |||||||||    
T  43286034 gagaaatgatatttggacaaccattttctaataacttttgtgacaactttctctct 43285979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 7795378 - 7795321
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||| || |  |||||| ||| ||||||||||||||||||||||||    
T  7795378 atgagaaatgatatttatagaactattttttaacaacttttgtgacaattttctctct 7795321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 10344323 - 10344378
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||| |||||| |||||| ||||| ||||| |||||||||    
T  10344323 tgagaaatgatatttgtacatctattttataataatttttg-gacaactttctctct 10344378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 10644873 - 10644818
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||   ||||| ||| |||||||||||||| |||||||||    
T  10644873 gagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctct 10644818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 414
Target Start/End: Complemental strand, 23754780 - 23754725
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctct 414  Q
    ||||||||||||||||| |||   ||||| |||||||||||||||||| |||||||    
T  23754780 atgagaaatgatatttgaacaaccattttttaataacttttgtgacaactttctct 23754725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 35792069 - 35792124
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||   ||||| ||| |||||||||||||| |||||||||    
T  35792069 gagaaatgatatttgtacaatcattttttaaaaacttttgtgacaactttctctct 35792124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 43715875 - 43715929
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||   ||||||||| |||||||||||||| |||||||||    
T  43715875 gagaaatgatatttgtacaaccattttctaa-aacttttgtgacaactttctctct 43715929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 5924808 - 5924864
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||| |||||| |||||| |||||| |||||| |||| |||||||||    
T  5924808 atgagaaatgatattcgtacatctattttataataatttttgt-acaactttctctct 5924864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 28756533 - 28756590
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||| ||   ||||| |||||| ||||||||||||||| |||||    
T  28756533 atgagaaatgatatttgtgcaatcattttataataatttttgtgacaattttatctct 28756590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 42786733 - 42786676
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||||   ||||||| | || ||||||||||| |||||||||    
T  42786733 atgagaaatgatatttgtacaaccattttcttacaatttttgtgacaactttctctct 42786676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 45406057 - 45406000
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||| |||  |||||| |||||| |||||||| |||||| |||||    
T  45406057 atgagaaatgatatttgaacaactattttttaataatttttgtgataattttttctct 45406000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 9549267 - 9549215
Alignment:
Q  364 aaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||| ||||  ||||| | | ||||||||||||||||||||||||    
T  9549267 aaatgatatttgaacatccattttgtgacaacttttgtgacaattttctctct 9549215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 11114741 - 11114686
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||||  |||||  |||||||||| |||||| |||||||||    
T  11114741 tgagaaatgatatttgtacatccattttgcaataactttt-tgacaactttctctct 11114686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 22767131 - 22767186
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||   ||||||| | ||||||| ||||||||||||||||    
T  22767131 tgagaaatgatatttgtacaaccattttctcacaactttt-tgacaattttctctct 22767186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 416
Target Start/End: Complemental strand, 30943919 - 30943856
Alignment:
Q  352 tttataaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||| |||||||||||||||||||||   | ||| ||| ||||||| ||||||||||||||||    
T  30943919 tttatatatgagaaatgatatttgtacaaccaatttttaacaactttt-tgacaattttctctct 30943856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 39031280 - 39031228
Alignment:
Q  364 aaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||  |||||| | ||||||||||  ||||||||||||||    
T  39031280 aaatgatatttgtacaattatttttttataacttttgaaacaattttctctct 39031228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 34757970 - 34757921
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaatttt 410  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  34757970 gagaaatgatatttgtacatctattttctaataacttttgtgataatttt 34757921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 34759244 - 34759195
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaatttt 410  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  34759244 gagaaatgatatttgtacatctattttctaataacttttgtgataatttt 34759195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 32696860 - 32696805
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||   ||||||||| ||||||||||| ||||||||||||    
T  32696860 gagaaatgatatttgtacaaccattttctaacaacttttgtgataattttctctct 32696805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 37514203 - 37514148
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||  ||||| ||| |||||||||||||| |||||||||    
T  37514203 gagaaatgatatttgtacatccattttgtaacaacttttgtgacaactttctctct 37514148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 42815404 - 42815459
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||  |||||| ||| |||||||||||||| |||||||||    
T  42815404 gagaaatgatatttgtacaactattttgtaacaacttttgtgacaactttctctct 42815459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 3078981 - 3078924
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||||   ||||| ||| |||||||||||||| |||||||||    
T  3078981 atgagaaatgatatttgtacaatcattttgtaacaacttttgtgacaactttctctct 3078924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 414
Target Start/End: Original strand, 47015007 - 47015060
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctct 414  Q
    |||||||||||||||||||  ||||| |||| |||||||||||||| |||||||    
T  47015007 gagaaatgatatttgtacaattatttcctaacaacttttgtgacaactttctct 47015060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 31469061 - 31469005
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||| ||||||   ||||||||| || |||||||||||||||||||||    
T  31469061 tgagaaatgatatatgtacaaccattttctaacaatttttgtgacaattttctctct 31469005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 9472584 - 9472530
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||  ||||||||||||| |||| |||||| |||||||||    
T  9472584 gagaaatgatatttgtacaactattttctaataa-ttttttgacaactttctctct 9472530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 12241058 - 12241112
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||  |||||||||| ||||||| |||||| |||||||||    
T  12241058 gagaaatgatatttgtacaactattttctaacaactttt-tgacaactttctctct 12241112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 33820407 - 33820353
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||  |||||||||| ||||||| |||||| |||||||||    
T  33820407 gagaaatgatatttgtacaactattttctaacaactttt-tgacaactttctctct 33820353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 416
Target Start/End: Complemental strand, 39881104 - 39881047
Alignment:
Q  358 aatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||||   ||||||||| ||||||| |||||| |||||||||    
T  39881104 aatgagaaatgatatttgtacaatcattttctaacaactttt-tgacaactttctctct 39881047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 48649519 - 48649573
Alignment:
Q  362 agaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||| |||||||| ||||   ||||||||| ||||||||||||||||||||||||    
T  48649519 agaagtgatatttttacaaccattttctaacaacttttgtgacaattttctctct 48649573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 14443196 - 14443253
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||| |||   ||||| | | ||||||||||||||||||||||||    
T  14443196 atgagaaatgatatttgaacaatcattttttgacaacttttgtgacaattttctctct 14443253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 20760255 - 20760300
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaa 406  Q
    |||||||||||||||||||  |||||| ||| ||||||||||||||    
T  20760255 gagaaatgatatttgtacaattattttttaacaacttttgtgacaa 20760300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 20766646 - 20766691
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaa 406  Q
    |||||||||||||||||||  |||||| ||| ||||||||||||||    
T  20766646 gagaaatgatatttgtacaattattttttaacaacttttgtgacaa 20766691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 48722059 - 48722123
Alignment:
Q  351 atttataaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||| |||| ||||||||||||||||||||  |||||  || ||||||| ||||||||||||||||    
T  48722059 atttttaaaagagaaatgatatttgtacatccattttgcaacaactttt-tgacaattttctctct 48722123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 53654821 - 53654768
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctct 414  Q
    ||||||||||||||| |||| |||||| | |||| ||||||||||| |||||||    
T  53654821 gagaaatgatatttgaacatctattttatgataatttttgtgacaactttctct 53654768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 415
Target Start/End: Original strand, 56271357 - 56271414
Alignment:
Q  358 aatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctc 415  Q
    |||||||||||||||||| ||||  ||||| | |||||||||||||||| ||| ||||    
T  56271357 aatgagaaatgatatttgaacatccattttatgataacttttgtgacaactttttctc 56271414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 25523270 - 25523215
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||  |||||||| | ||||||| |||||| |||||||||    
T  25523270 tgagaaatgatatttgtacaactattttctcacaactttt-tgacaactttctctct 25523215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 410
Target Start/End: Complemental strand, 31995990 - 31995938
Alignment:
Q  358 aatgagaaatgatatttgtacatatattttctaataacttttgtgacaatttt 410  Q
    ||||||||||||||||||||||  |||||| | |||| |||||||| ||||||    
T  31995990 aatgagaaatgatatttgtacaactattttttgataaattttgtgataatttt 31995938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 36123532 - 36123476
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||   ||||| ||| ||||||| |||||| |||||||||    
T  36123532 tgagaaatgatatttgtacaatcattttataacaacttttatgacaactttctctct 36123476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 38715251 - 38715303
Alignment:
Q  363 gaaatgatatttgtacatatattttctaataacttttgtgacaattttctctc 415  Q
    ||||||||||||| |||| |||||  | |||| ||||||||||||||||||||    
T  38715251 gaaatgatatttgaacatttatttggtgataatttttgtgacaattttctctc 38715303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 52430880 - 52430932
Alignment:
Q  364 aaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||  |||||| | | ||||||| ||||||||||||||||    
T  52430880 aaatgatatttgtacaactattttatgacaacttttatgacaattttctctct 52430932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 55996421 - 55996476
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||   ||||||||| || |||| ||||||||||||||||    
T  55996421 tgagaaatgatatttgtacaatcattttctaacaa-ttttttgacaattttctctct 55996476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 416
Target Start/End: Original strand, 56557724 - 56557788
Alignment:
Q  352 tttataaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||| ||| ||||||||||||||| |||   ||||| | | ||||||||||||||||||||||||    
T  56557724 tttagaaaagagaaatgatatttgaacaacaattttatgacaacttttgtgacaattttctctct 56557788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 40854727 - 40854671
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||| |||||||  ||||||||| ||||||||||||||||||||||||    
T  40854727 tgagaaatgatatctgtacatccattttctaacaacttttgtgacaattttctctct 40854671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 23844956 - 23845016
Alignment:
Q  352 tttataaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctc 413  Q
    ||||||||||||||||||||||||||||   ||||| |||||| ||||||||||||||||||    
T  23844956 tttataaatgagaaatgatatttgtacaacaattttgtaataa-ttttgtgacaattttctc 23845016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 34108928 - 34108871
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||| ||||||   ||||||||| ||||||||||||||||||||||||    
T  34108928 atgagaaatgatatatgtacaaccattttctaacaacttttgtgacaattttctctct 34108871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 47012641 - 47012586
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||   |||||||||||| ||||||||||||||| |||||    
T  47012641 gagaaatgatatttgtacaatcattttctaataatttttgtgacaattttatctct 47012586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 414
Target Start/End: Complemental strand, 22638959 - 22638902
Alignment:
Q  357 aaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctct 414  Q
    ||||||||||||||||||| |||| |||||| | | |||||||||||||| |||||||    
T  22638959 aaatgagaaatgatatttgaacatctattttatgacaacttttgtgacaaatttctct 22638902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 35586844 - 35586789
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||| ||||  ||||| | |||||||||||||||| |||||||||    
T  35586844 gagaaatgatatttgaacatccattttatgataacttttgtgacaactttctctct 35586789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 35823046 - 35822991
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||  ||||||||| || |||| |||||| |||||||||    
T  35823046 gagaaatgatatttgtacatccattttctaacaatttttatgacaactttctctct 35822991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 42584802 - 42584857
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||| ||||||   ||||||||| |||||||||||||| |||||||||    
T  42584802 gagaaatgatatatgtacaaccattttctaacaacttttgtgacaactttctctct 42584857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 44496873 - 44496819
Alignment:
Q  362 agaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||| |  |||||||||| || ||||||||||| |||||||||    
T  44496873 agaaatgatatttgtataactattttctaacaatttttgtgacaactttctctct 44496819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 412
Target Start/End: Original strand, 6522349 - 6522406
Alignment:
Q  355 ataaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttct 412  Q
    ||||| ||||||| |||||||||||  ||  || ||||||||||||||||||||||||    
T  6522349 ataaacgagaaataatatttgtacaactacattttaataacttttgtgacaattttct 6522406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 21037306 - 21037251
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||  || ||||||| ||||||| |||||| |||||||||    
T  21037306 tgagaaatgatatttgtacaattaatttctaacaactttt-tgacaactttctctct 21037251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 24533011 - 24532959
Alignment:
Q  364 aaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||| |||  |||||||| |||| ||||||||||||||| |||||    
T  24533011 aaatgatatttgaacaactattttctgataatttttgtgacaattttttctct 24532959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 416
Target Start/End: Complemental strand, 44184638 - 44184575
Alignment:
Q  352 tttataaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||| ||||||||||||||| |||| ||||||   | |||||||||||||| |||||||||    
T  44184638 tttataaa-gagaaatgatatttgaacatctattttgcgacaacttttgtgacaactttctctct 44184575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 358 - 416
Target Start/End: Original strand, 22098252 - 22098310
Alignment:
Q  358 aatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||||   ||||||||| |||||||||||||| |||||||||    
T  22098252 aatgagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctct 22098310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 14322031 - 14321971
Alignment:
Q  356 taaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||| |||||||||||||||||   ||||||||| |||||||||||||| |||||||||    
T  14322031 taaatgggaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctct 14321971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 38493625 - 38493679
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| || |||||||||    
T  38493625 gagaaatgatatttgtaca-ataatttctaataacttttgtgataactttctctct 38493679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 416
Target Start/End: Original strand, 40829410 - 40829469
Alignment:
Q  357 aaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||||||   ||||| |||||| ||||||||||||||| |||||    
T  40829410 aaatgagaaatgatatttgtacaaccattttttaataatttttgtgacaattttttctct 40829469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 416
Target Start/End: Complemental strand, 41175780 - 41175722
Alignment:
Q  358 aatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||| |||| ||||||   |||||||||||||||| |||||||||    
T  41175780 aatgagaaatgatatttgaacatctattttgggataacttttgtgacaactttctctct 41175722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 414
Target Start/End: Original strand, 4088443 - 4088496
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctct 414  Q
    ||||||||||||||||||||  ||||| ||| |||||||||||||| |||||||    
T  4088443 gagaaatgatatttgtacatccattttataacaacttttgtgacaactttctct 4088496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 413
Target Start/End: Complemental strand, 43214130 - 43214078
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctc 413  Q
    ||||||||||||||| |||| ||||||  || |||||||||||||||||||||    
T  43214130 gagaaatgatatttgaacatctattttgcaacaacttttgtgacaattttctc 43214078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 189774 - 189719
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||| ||||  ||||| | |||||||||||||||| |||||||||    
T  189774 gagaaatgatatttgaacatccattttatgataacttttgtgacaactttctctct 189719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 1293157 - 1293102
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||   ||||| ||| |||||||||||||| |||||||||    
T  1293157 gagaaatgatatttgtacaaccattttttaacaacttttgtgacaactttctctct 1293102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 6940221 - 6940166
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||   ||||| |||||| ||||||||||| |||||||||    
T  6940221 gagaaatgatatttgtacaaccattttataataatttttgtgacaactttctctct 6940166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 10659144 - 10659089
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||| ||||  ||||| |||||||||||||||||| ||| |||||    
T  10659144 gagaaatgatatttgaacattaattttttaataacttttgtgacaactttatctct 10659089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 18695318 - 18695373
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||   ||||| ||| |||||||||||||| |||||||||    
T  18695318 gagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctct 18695373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 19481253 - 19481198
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||| ||||  ||||| | |||||||||||||||| |||||||||    
T  19481253 gagaaatgatatttgaacatccattttatgataacttttgtgacaactttctctct 19481198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 19844380 - 19844325
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||  |||||| | ||||||||||||| || |||||||||    
T  19844380 gagaaatgatatttgtacaactattttttgataacttttgtgataactttctctct 19844325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 26686881 - 26686936
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||| ||||  |||||| |||||| ||||||||||| |||||||||    
T  26686881 gagaaatgatatttatacaattattttttaataatttttgtgacaactttctctct 26686936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 26956612 - 26956667
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||| ||||  |||||| |||||| ||||||||||| |||||||||    
T  26956612 gagaaatgatatttatacaattattttttaataatttttgtgacaactttctctct 26956667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 32912038 - 32912093
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||| ||||  ||||| | |||| |||||||||||||||||||||    
T  32912038 gagaaatgatatttgaacattcattttatgataatttttgtgacaattttctctct 32912093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 416
Target Start/End: Original strand, 6517709 - 6517767
Alignment:
Q  358 aatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||| ||||  ||||| | | |||||||||||||| |||||||||    
T  6517709 aatgagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctct 6517767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 9168236 - 9168183
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctct 414  Q
    ||||||| |||||||||||   |||| |||| ||||||||||||||||||||||    
T  9168236 gagaaataatatttgtacaaccatttcctaacaacttttgtgacaattttctct 9168183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 21922221 - 21922161
Alignment:
Q  356 taaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||| ||||  ||||| | | ||| |||||||||| |||||||||    
T  21922221 taaatgagaaatgatatttgaacatccattttgtgacaacgtttgtgacaactttctctct 21922161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 31748335 - 31748391
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||  |||||| | | |||||||||||||| ||| |||||    
T  31748335 tgagaaatgatatttgtacaactatttttttacaacttttgtgacaactttttctct 31748391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 34124620 - 34124676
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||| ||||  ||||| | |||| |||||||| ||||||||||||    
T  34124620 tgagaaatgatatttgaacatccattttatgataatttttgtgataattttctctct 34124676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 35473322 - 35473378
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||| | || |||||| | |||| ||||||||||| |||||||||    
T  35473322 tgagaaatgatatttgaatatctattttatgataatttttgtgacaactttctctct 35473378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 21738689 - 21738632
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||||   |||||||||||| |||||||| ||||||||||||    
T  21738689 atgagaaatgatatttgtacaaccattttctaataatttttgtgataattttctctct 21738632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 6336252 - 6336307
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||   ||||||||| |||||||||||||| |||||||||    
T  6336252 gagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctct 6336307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 19843484 - 19843539
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||| |||||||||||| ||||| |||| |||||||||||||| |||||||||    
T  19843484 gagaaataatatttgtacatctatttcctaacaacttttgtgacaactttctctct 19843539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 14255298 - 14255356
Alignment:
Q  357 aaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctc 415  Q
    ||||||||||| |||||||||||  |||||| | | |||||||||||||||||||||||    
T  14255298 aaatgagaaataatatttgtacaactattttatgacaacttttgtgacaattttctctc 14255356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 12784472 - 12784415
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||||   ||||| |||||| ||||||||||| |||||||||    
T  12784472 atgagaaatgatatttgtacaaccattttataataatttttgtgacaactttctctct 12784415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 18876994 - 18876938
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||| |||| |||||  |||||| ||||||||||| |||||||||    
T  18876994 tgagaaatgatatttgaacatctatttggtaataatttttgtgacaactttctctct 18876938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 416
Target Start/End: Complemental strand, 40358192 - 40358128
Alignment:
Q  352 tttataaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||| || |||||||||||||| ||||  |||||| |||||| ||||||||||||||| |||||    
T  40358192 tttattaaagagaaatgatatttctacaactattttttaataatttttgtgacaattttttctct 40358128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 3091741 - 3091795
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||  |||||| | ||||||||| ||||||||||||||||    
T  3091741 gagaaatgatatttgtacaactattttgtgataactttt-tgacaattttctctct 3091795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 8352835 - 8352889
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||  |||||| |||||||||||  |||||||||||||||    
T  8352835 gagaaatgatatttgtacaactattttttaataactttt-agacaattttctctct 8352889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 363 - 414
Target Start/End: Complemental strand, 11167588 - 11167537
Alignment:
Q  363 gaaatgatatttgtacatatattttctaataacttttgtgacaattttctct 414  Q
    ||||||||||||| |||| |||||| | |||||||||||| |||||||||||    
T  11167588 gaaatgatatttgaacatttattttgtgataacttttgtgtcaattttctct 11167537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 18737945 - 18737890
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||| ||  ||||| ||| |||||||||||||| |||||||||    
T  18737945 gagaaatgatatttgtatatccattttttaacaacttttgtgacaactttctctct 18737890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 415
Target Start/End: Original strand, 24766152 - 24766206
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctc 415  Q
    |||||||||||||||||||   ||||| |||||||||||||||||| ||| ||||    
T  24766152 gagaaatgatatttgtacaaccattttttaataacttttgtgacaactttatctc 24766206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 416
Target Start/End: Original strand, 33616462 - 33616520
Alignment:
Q  358 aatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||||| |||||  ||| || |||||||| || |||||||||    
T  33616462 aatgagaaatgatatttgtacatctatttcttaacaaattttgtgataactttctctct 33616520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 416
Target Start/End: Complemental strand, 40210142 - 40210084
Alignment:
Q  358 aatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||| |||  ||||||  ||||| ||||||||||| |||||||||    
T  40210142 aatgagaaatgatatttgaacaactatttttaaataatttttgtgacaactttctctct 40210084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 34372845 - 34372901
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||| ||||  |||||||||| || |||| ||||||||||||||||    
T  34372845 atgagaaatgatatttctacaattattttctaacaa-ttttttgacaattttctctct 34372901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 414
Target Start/End: Original strand, 36517196 - 36517249
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctct 414  Q
    ||||||||||||||| |||| |||||| | |||| ||||||||||| |||||||    
T  36517196 gagaaatgatatttgaacatctattttatgataatttttgtgacaactttctct 36517249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 4657301 - 4657356
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||| |||||||| |  ||||||||||||| ||||||||||||||| |||||    
T  4657301 tgagaaatg-tatttgtagaattattttctaataatttttgtgacaattttttctct 4657356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 6999140 - 6999084
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||| ||||  ||||| | | |||||||||||||| |||||||||    
T  6999140 tgagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctct 6999084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 8427551 - 8427607
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||| |||| |||||| | | || ||||||||||| |||||||||    
T  8427551 tgagaaatgatatttgaacatctattttttgacaatttttgtgacaactttctctct 8427607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 26481158 - 26481110
Alignment:
Q  364 aaatgatatttgtacatatattttctaataacttttgtgacaattttct 412  Q
    |||||||||||| |||  |||||| ||| ||||||||||||||||||||    
T  26481158 aaatgatatttgaacaattattttttaacaacttttgtgacaattttct 26481110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 28245727 - 28245783
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||| |||| ||||||   | |||||||||||||| |||||||||    
T  28245727 tgagaaatgatatttgaacatctattttgcgacaacttttgtgacaactttctctct 28245783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 34134847 - 34134787
Alignment:
Q  356 taaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||| ||||   ||||| ||| ||||||| |||||| |||||||||    
T  34134847 taaatgagaaatgatatttttacaaccattttgtaacaacttttctgacaactttctctct 34134787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 34431899 - 34431843
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||| || | ||||||||| ||| || ||||||||||| |||||||||    
T  34431899 tgagaaatgatatctgaatatatattttgtaacaatttttgtgacaactttctctct 34431843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 35334519 - 35334567
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaatt 408  Q
    ||||||||||||||||||||   ||||| ||||||||||||| ||||||    
T  35334519 tgagaaatgatatttgtacaaccattttataataacttttgtaacaatt 35334567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 416
Target Start/End: Original strand, 33651015 - 33651075
Alignment:
Q  356 taaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||| ||||||||||||||| |||| |||||| |||||| ||||||||||| |||||||||    
T  33651015 taaaagagaaatgatatttgaacatctattttgtaataatttttgtgacaactttctctct 33651075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 416
Target Start/End: Original strand, 1376361 - 1376419
Alignment:
Q  358 aatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||| |||||||||||   ||||||||| |||||||||||||| |||||||||    
T  1376361 aatgagaaattatatttgtacaaccattttctaacaacttttgtgacaactttctctct 1376419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 416
Target Start/End: Original strand, 1384109 - 1384167
Alignment:
Q  358 aatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||| |||||||||||   ||||||||| |||||||||||||| |||||||||    
T  1384109 aatgagaaattatatttgtacaaccattttctaacaacttttgtgacaactttctctct 1384167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 34570663 - 34570611
Alignment:
Q  364 aaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||   ||||| |||||||||||||||||| |||||||||    
T  34570663 aaatgatatttgtacaaccattttgtaataacttttgtgacaactttctctct 34570611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 412
Target Start/End: Original strand, 11013993 - 11014048
Alignment:
Q  357 aaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttct 412  Q
    |||||||||||||||||| ||||   ||||| ||||||||||||||| ||||||||    
T  11013993 aaatgagaaatgatatttctacaatcattttgtaataacttttgtgataattttct 11014048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 35213634 - 35213577
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||| |||| |||||| | | ||||||||| |||| |||||||||    
T  35213634 atgagaaatgatatttgaacatctattttgtgacaacttttgtaacaactttctctct 35213577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 416
Target Start/End: Complemental strand, 11635615 - 11635551
Alignment:
Q  352 tttataaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||| ||||||||||||||||||| |||   ||||| | | |||||||||||||| |||||||||    
T  11635615 tttaaaaatgagaaatgatatttgaacaatcattttttgacaacttttgtgacaactttctctct 11635551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 27102114 - 27102169
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||   |||||||||||| |||| |||||||||| |||||    
T  27102114 tgagaaatgatatttgtacaaccattttctaataa-ttttttgacaattttttctct 27102169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 27143936 - 27143991
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||   |||||||||||| |||| |||||||||| |||||    
T  27143936 tgagaaatgatatttgtacaaccattttctaataa-ttttttgacaattttttctct 27143991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 48352995 - 48353051
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||||  ||||| ||| |||||||||||||| |||||||||    
T  48352995 tgagaaatgatatttgtacatccattttttaacaacttttgtgacaactttctctct 48353051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 51137108 - 51137052
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||  |||||| |||||||||||||||||| ||| |||||    
T  51137108 tgagaaatgatatttgtacaactattttttaataacttttgtgacaactttttctct 51137052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 37894314 - 37894259
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||   ||||||||| |||||||||||||| |||||||||    
T  37894314 gagaaatgatatttgtacaaccattttctaacaacttttgtgacaactttctctct 37894259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 412
Target Start/End: Original strand, 49021711 - 49021762
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttct 412  Q
    ||||||||||||||||||||  ||||| |||||||||||||||||| |||||    
T  49021711 gagaaatgatatttgtacatccattttttaataacttttgtgacaactttct 49021762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 50559283 - 50559228
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||  |||||| | | ||||||||||||||||||||||||    
T  50559283 gagaaatgatatttgtacaactattttttgacaacttttgtgacaattttctctct 50559228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 54099428 - 54099373
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||| ||||||||||||  ||||||||| |||||||||||||| |||||||||    
T  54099428 gagaaataatatttgtacatccattttctaacaacttttgtgacaactttctctct 54099373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 416
Target Start/End: Complemental strand, 6178499 - 6178442
Alignment:
Q  358 aatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||||  |||||| | | ||||||||||||||||||||||||    
T  6178499 aatgagaaatgatatttgtacaactatttt-tgacaacttttgtgacaattttctctct 6178442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 34058026 - 34057969
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||| ||||  ||||| | |||||||||||||||| |||||||||    
T  34058026 atgagaaatgatatttgaacatccattttatgataacttttgtgacaactttctctct 34057969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 38363298 - 38363241
Alignment:
Q  355 ataaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttct 412  Q
    ||||| |||||||||||||||||||  |||||| |||||| |||| ||||||||||||    
T  38363298 ataaaagagaaatgatatttgtacaattattttttaataatttttatgacaattttct 38363241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 52714731 - 52714788
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||||  ||||||||| || |||||||| || |||||||||    
T  52714731 atgagaaatgatatttgtacatccattttctaacaatttttgtgataactttctctct 52714788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 29573428 - 29573372
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||   ||||| ||| |||||||||||||| |||||||||    
T  29573428 tgagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctct 29573372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 31017466 - 31017411
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||   ||||||||| ||||||| ||||||||||||||||    
T  31017466 tgagaaatgatatttgtacaatcattttctaacaactttt-tgacaattttctctct 31017411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 48944782 - 48944727
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||||||||   ||||||||| ||||||||| ||||||||||||||    
T  48944782 tgagaaatgatatttgtacaaccattttctaacaacttttgt-acaattttctctct 48944727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 8846491 - 8846546
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||| |||| ||||   ||| ||||||||||||||||||||||||    
T  8846491 gagaaatgatatttgaacatctattcgataacaacttttgtgacaattttctctct 8846546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 19150390 - 19150335
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||   ||||| ||| |||||||||||||| |||||||||    
T  19150390 gagaaatgatatttgtacaatcattttttaacaacttttgtgacaactttctctct 19150335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 28920121 - 28920066
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||  |||||  |||||| ||||||||||| |||||||||    
T  28920121 gagaaatgatatttgtacaactatttgataataatttttgtgacaactttctctct 28920066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 365 - 416
Target Start/End: Complemental strand, 31931086 - 31931035
Alignment:
Q  365 aatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||| ||||  ||||| ||| ||||||||||||||||||||||||    
T  31931086 aatgatatttgaacatccattttttaacaacttttgtgacaattttctctct 31931035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 37754447 - 37754501
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||| |||||| |||||| ||||| ||||| |||||||||    
T  37754447 gagaaatgatatttgtacatctattttataataatttttg-gacaactttctctct 37754501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 40159909 - 40159855
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||  |||||||||| ||||||| |||||| |||||||||    
T  40159909 gagaaatgatatttgtacaactattttctaacaactttt-tgacaactttctctct 40159855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 49417575 - 49417630
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||||||||||||| |||| |||||| | | |||||||||||||| |||||||||    
T  49417575 gagaaatgatatttgaacatctattttatgacaacttttgtgacaactttctctct 49417630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 51032695 - 51032641
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||   ||||||||| ||||||| ||||||||||||||||    
T  51032695 gagaaatgatatttgtacaaccattttctaacaactttt-tgacaattttctctct 51032641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 52963387 - 52963332
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||   ||||| ||| |||||||||||||||||| |||||    
T  52963387 gagaaatgatatttgtacaaccattttttaacaacttttgtgacaattttttctct 52963332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 9311038 - 9311095
Alignment:
Q  359 atgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||||||   ||||||| ||||  |||||||||| |||||||||    
T  9311038 atgagaaatgatatttgtacaatcattttctgataatatttgtgacaactttctctct 9311095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 33796260 - 33796321
Alignment:
Q  355 ataaatgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    ||||| ||||||||||| ||||| ||  ||||||||| || ||||||||||| |||||||||    
T  33796260 ataaaagagaaatgatacttgtatatcgattttctaacaatttttgtgacaactttctctct 33796321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 416
Target Start/End: Complemental strand, 47988554 - 47988502
Alignment:
Q  363 gaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||  |||||||||| ||||||| |||||| |||||||||    
T  47988554 gaaatgatatttgtacaactattttctaacaactttt-tgacaactttctctct 47988502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 416
Target Start/End: Complemental strand, 47997841 - 47997789
Alignment:
Q  363 gaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||  |||||||||| ||||||| |||||| |||||||||    
T  47997841 gaaatgatatttgtacaactattttctaacaactttt-tgacaactttctctct 47997789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 416
Target Start/End: Complemental strand, 48007128 - 48007076
Alignment:
Q  363 gaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||||  |||||||||| ||||||| |||||| |||||||||    
T  48007128 gaaatgatatttgtacaactattttctaacaactttt-tgacaactttctctct 48007076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 14207330 - 14207274
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||| |||   ||||| ||| |||||||||||||| |||||||||    
T  14207330 tgagaaatgatatttgaacaacgattttgtaacaacttttgtgacaactttctctct 14207274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 14215078 - 14215022
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||||||||||||| |||   ||||| ||| |||||||||||||| |||||||||    
T  14215078 tgagaaatgatatttgaacaacgattttgtaacaacttttgtgacaactttctctct 14215022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 51343407 - 51343463
Alignment:
Q  360 tgagaaatgatatttgtacatatattttctaataacttttgtgacaattttctctct 416  Q
    |||||| ||||||||| |||| |||||  | | ||||||||||||||||||||||||    
T  51343407 tgagaagtgatatttgaacatctatttgatgacaacttttgtgacaattttctctct 51343463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 414
Target Start/End: Original strand, 1146 - 1199
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgtgacaattttctct 414  Q
    |||||||||||||||||||  ||||| |||| |||||||||||||| |||||||    
T  1146 gagaaatgatatttgtacaattatttcctaacaacttttgtgacaactttctct 1199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 401
Target Start/End: Complemental strand, 204516 - 204476
Alignment:
Q  361 gagaaatgatatttgtacatatattttctaataacttttgt 401  Q
    |||||||||||||||||||| |||||||| | |||||||||    
T  204516 gagaaatgatatttgtacatctattttctgacaacttttgt 204476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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