View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16804_low_12 (Length: 410)
Name: NF16804_low_12
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16804_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 6 - 303
Target Start/End: Original strand, 1331565 - 1331861
Alignment:
| Q |
6 |
agcagcacagacgtcccccatgtttactcaaattgagcagaatcctaagtc--aaacaatacttttcaatttgctttatcaaatgtcacctatgaaattg |
103 |
Q |
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| T |
1331565 |
agcaacacaaacgtcaaccatgtttactcaaattgagcagcatcctaaggcctaagcaatactttccaatttgctttattaaatatcacctatgaatttg |
1331664 |
T |
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| Q |
104 |
tggatacgtccacattggttggacaa-----ccaaccaggtatgaaaacctattcttgagtcagtgcaatttgagactgttgaagttgaatcttcttttg |
198 |
Q |
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| T |
1331665 |
tggatatatccccattggttggacaacttgtccaaccaggtat-aaaacctattcttgagctggtgcaatctgagaccgttgaagttgaatctccttttg |
1331763 |
T |
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| Q |
199 |
agagg-ttgtcccatataactttgaagcatgtgggaattctcctattccagatgttgctatgcatcgagatttggtaacagtggattggaaagtgtgacc |
297 |
Q |
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| T |
1331764 |
agaggccacccccatataactttgaagcatgt-gaaat--tcctattccatatgttgatatgcatcgagatttggtataag-----tggaaagtgtgacc |
1331855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 347
Target Start/End: Original strand, 1334017 - 1334067
Alignment:
| Q |
297 |
caacaagcctactcataatctatccaactaccctccacatagctgtcatgt |
347 |
Q |
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| T |
1334017 |
caacaagcctgctcataatctatccaactaccctccacatagttgtcatgt |
1334067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 394
Target Start/End: Original strand, 1334642 - 1334676
Alignment:
| Q |
360 |
taatgttattttaatctaaccttagtcattcttag |
394 |
Q |
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| T |
1334642 |
taatgttattttaatctaaccttggtcattcttag |
1334676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 3116705 - 3116802
Alignment:
| Q |
29 |
ttactcaaattgagcagaatcctaagtcaaacaatacttttcaatttgctttatcaaatgtcacctatgaaattgtggatacgtccacattggttgga |
126 |
Q |
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| T |
3116705 |
ttactcatcttgagcatcatcctaaggcaatcattacttttcactttgtgttatcaaatgtcacggatgaaattatggatacgtctacattggatgga |
3116802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 339
Target Start/End: Original strand, 26312985 - 26313013
Alignment:
| Q |
311 |
ataatctatccaactaccctccacatagc |
339 |
Q |
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| T |
26312985 |
ataatctatccaactaccctccacatagc |
26313013 |
T |
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