View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16804_low_19 (Length: 310)
Name: NF16804_low_19
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16804_low_19 |
 | |
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| [»] chr5 (7 HSPs) |
| |
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| [»] chr7 (7 HSPs) |
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|
| [»] chr1 (3 HSPs) |
| |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 1499226 - 1499518
Alignment:
| Q |
18 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1499226 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
1499325 |
T |
|
| Q |
118 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1499326 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
1499425 |
T |
|
| Q |
218 |
gatgtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
310 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1499426 |
gatgtaccaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
1499518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 1482179 - 1482471
Alignment:
| Q |
18 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
117 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| | ||||||||||| ||||||||||||||||||||||| |||||||||| ||||| || ||||| |||| |
|
|
| T |
1482179 |
gatgctaggcaagacatggtggtggtagaggtgcctagactaggaaaggaggctgcagtgaaggctataaaagaatggggccaaccaaaatcaaagatta |
1482278 |
T |
|
| Q |
118 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
217 |
Q |
| |
|
|||| ||||| ||||| ||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| || ||||| |
|
|
| T |
1482279 |
cacacttaatattttgtaccacaagtggtgtagacatgcctggtgccgattaccaactcacaaaactcttaggtcttcgtccatatgtgaagagatacat |
1482378 |
T |
|
| Q |
218 |
gatgtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
310 |
Q |
| |
|
|||||| |||| ||| || | ||||||||| || || ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1482379 |
gatgtaccaacaaggatgctttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaataataaaggtgctcgtgtgttggttgt |
1482471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 1504963 - 1505255
Alignment:
| Q |
18 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
117 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||| || || ||||| ||||||||||||| || |||||||| |||| |
|
|
| T |
1504963 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgccgtaaaagctataaaagaatggggtcagccaaagtcaaagatta |
1505062 |
T |
|
| Q |
118 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| || |||||| |||||||| |||||||||||||||||||| || ||||||||||| || ||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
1505063 |
ctcacttaattgtttgcaccacaagtggtgtagacatgcctggagctgattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacat |
1505162 |
T |
|
| Q |
218 |
gatgtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
310 |
Q |
| |
|
|||||| || | ||| |||| ||||||||| || || ||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
1505163 |
gatgtaccagcaaggatgttttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaacaacaaaggtgcccgtgtgttggttgt |
1505255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 1477985 - 1478277
Alignment:
| Q |
18 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
117 |
Q |
| |
|
||||||||||| |||||| ||| |||||| ||||||||||||| ||||||||||||||||| ||||| |||||||||| ||||| || ||||| |||| |
|
|
| T |
1477985 |
gatgctaggcaggacatggtggtggtagaagtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggccaaccaaaatcaaagatta |
1478084 |
T |
|
| Q |
118 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
217 |
Q |
| |
|
|||| || || ||||||||| |||||||||||||||||||| || ||||||||||| || ||||||||||||||| ||||||||||| ||||| || |
|
|
| T |
1478085 |
cacacttgatcttttgcaccacaagtggtgtagacatgcctggcgctgattaccaactcaccaaactcttaggtcttcgtccatatgtgaagaggtatat |
1478184 |
T |
|
| Q |
218 |
gatgtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
310 |
Q |
| |
|
|||||| |||| ||| |||| ||||||||| || || ||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
1478185 |
gatgtaccaacaaggatgttttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaacaataaaggtgctcgtgtgttggttgt |
1478277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 1492154 - 1492446
Alignment:
| Q |
18 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
117 |
Q |
| |
|
|||||||| ||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
1492154 |
gatgctagacaagacatggtggtggtagaagtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagatta |
1492253 |
T |
|
| Q |
118 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| || ||||| |||||||| || ||||||||||||||||| || ||||| ||||| || ||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
1492254 |
ctcacttaatcgtttgcaccacaagcggtgtagacatgcctggggccgattatcaactcactaaactcttaggtcttcgtccatatgtaaaaagatacat |
1492353 |
T |
|
| Q |
218 |
gatgtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
310 |
Q |
| |
|
|||||| || | ||| |||| ||||||||| || |||||||||||||| ||||| || |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
1492354 |
gatgtaccagcaaggttgttttgcaggtggcacggtacttcgtttggctaaggatttggctgagaacaacaaaggtgctcgtgtgttagttgt |
1492446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 1509110 - 1509402
Alignment:
| Q |
18 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
117 |
Q |
| |
|
|||||||||||||||||| ||| ||| || ||||||| ||||| || |||| ||||||||||||||| |||||||||| || || || ||||| |||| |
|
|
| T |
1509110 |
gatgctaggcaagacatggtggttgtaaaggtacctaggctaggaaaagaggttgcagtgaaggctataaaagaatggggccagccaaaatcaaagatta |
1509209 |
T |
|
| Q |
118 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
217 |
Q |
| |
|
|||||||||| ||||||||| |||||||| || ||| |||| || |||| ||||| || ||||| ||||||||| |||||||||| ||||||||||| |
|
|
| T |
1509210 |
cacatttaatcttttgcaccacaagtggtgttgatatgtctggagctcattatcaacttaccaaacttttaggtcttcacccatatgtaaaaaggtacat |
1509309 |
T |
|
| Q |
218 |
gatgtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
310 |
Q |
| |
|
|||||| |||| | |||||| ||||||||| || || |||| |||||| ||||| || ||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
1509310 |
gatgtaccaacaaaggtgttttgcaggtggcactgtgcttcatttggcaaaggatttggctgaaaataaccaagatgctcgtgtgttggttgt |
1509402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 1486656 - 1486945
Alignment:
| Q |
18 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
117 |
Q |
| |
|
|||||||||||||||||| ||| | ||| | ||||| ||||| || |||||||||||||| ||||| |||||| ||| ||||| |||||||| |||| |
|
|
| T |
1486656 |
gatgctaggcaagacatggtggtgcgagacgtgcctaggctaggaaatgaggctgcagtgaaagctataaaagaatagggccaaccaaagtcaaagatta |
1486755 |
T |
|
| Q |
118 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
217 |
Q |
| |
|
|||| ||||| ||||||||| |||||| ||| |||||||||||| ||||||||||| |||||||||||||||||| ||| |||||||| |||| || |
|
|
| T |
1486756 |
cacacttaatattttgcaccatgagtggtataggcatgcctggtgccgattaccaactcacaaaactcttaggtctttgcccggatgtgaaacggtatat |
1486855 |
T |
|
| Q |
218 |
gatgtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggt |
307 |
Q |
| |
|
||| || |||| ||| || | |||||| || || || || |||| ||| |||||||| |||||||| || |||| ||||| ||||||||| |
|
|
| T |
1486856 |
gatataccaacaaggatgctttgcagggggcactgttctacgttaggccaaggacttggctgagaacaataaagatgctcttgtgttggt |
1486945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 5284294 - 5284586
Alignment:
| Q |
18 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
117 |
Q |
| |
|
||||| |||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| |||||||| |||| |
|
|
| T |
5284294 |
gatgcaaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggccaaccaaagtcaaagatta |
5284393 |
T |
|
| Q |
118 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| || ||||| |||||||| |||||||||||||||||||| || ||||| ||||| || |||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
5284394 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacat |
5284493 |
T |
|
| Q |
218 |
gatgtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
310 |
Q |
| |
|
|||||| |||| |||||||| ||||||||| || |||||||||||||| || || ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5284494 |
gatgtaccaacaagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgt |
5284586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 5289833 - 5289541
Alignment:
| Q |
18 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
117 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
5289833 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagatta |
5289734 |
T |
|
| Q |
118 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| || ||||| |||||||| |||||||||||||||||||| || ||||| ||||| ||||||||||| |||||| ||||||||||||||||| || |
|
|
| T |
5289733 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatat |
5289634 |
T |
|
| Q |
218 |
gatgtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
310 |
Q |
| |
|
|||||| |||| |||||||| ||||||||| || || ||||||||||| || || || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
5289633 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
5289541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 5302482 - 5302774
Alignment:
| Q |
18 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
117 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
5302482 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagatta |
5302581 |
T |
|
| Q |
118 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| || ||||| |||||||| ||||||||||||||||| | || ||||| ||||| || |||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
5302582 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcccgaagctgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacat |
5302681 |
T |
|
| Q |
218 |
gatgtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
310 |
Q |
| |
|
|||||| |||| |||||||| ||||||||| || || ||||||||||| || || |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5302682 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatctagctgagaacaacaaaggtgctcgtgtgttggttgt |
5302774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 5310383 - 5310675
Alignment:
| Q |
18 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
117 |
Q |
| |
|
||||| |||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
5310383 |
gatgcaaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagatta |
5310482 |
T |
|
| Q |
118 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| || ||||| |||||||| |||||||||||||||||||| || ||||| ||||| ||||||||||| || ||| ||||||||||||||||| || |
|
|
| T |
5310483 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagctgattatcaactcacaaaactcttgggccttcgtccatatgtgaaaaggtatat |
5310582 |
T |
|
| Q |
218 |
gatgtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
310 |
Q |
| |
|
|||||| |||| |||||||| ||||||||| || || ||||||||||| || || || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
5310583 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
5310675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 5315097 - 5315389
Alignment:
| Q |
18 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
117 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
5315097 |
gatgctaggcaagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagatta |
5315196 |
T |
|
| Q |
118 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| || ||||| |||||||| |||||||| ||||||||||| || ||||| ||||| || ||||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
5315197 |
ctcacttaatcgtttgcaccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacat |
5315296 |
T |
|
| Q |
218 |
gatgtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
310 |
Q |
| |
|
|||||| |||| |||||| | ||||||||| || || || |||||||| || || || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
5315297 |
gatgtaccaacaagggtgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgt |
5315389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 46707124 - 46706832
Alignment:
| Q |
18 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
117 |
Q |
| |
|
||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
46707124 |
gatgccaggcaagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagatta |
46707025 |
T |
|
| Q |
118 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| || ||||| ||||||| ||||||||||||||||||||| || ||||||||||| ||||||||||| |||||| |||||||||||||||||| || |
|
|
| T |
46707024 |
cccacttaatcgtttgcactactagtggtgtagacatgcctggagctgattaccaactcacaaaactcttcggtcttcgcccatatgtgaaaaggtatat |
46706925 |
T |
|
| Q |
218 |
gatgtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
310 |
Q |
| |
|
|||||| |||| ||| || | |||||| || || | ||||||||||| || || || |||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
46706924 |
gatgtaccaacaaggttgctttgcaggaggcacggggcttcgtttggctaacgatttggctgagaacaacaaaggtgcccgtgtattggttgt |
46706832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 290
Target Start/End: Complemental strand, 32531019 - 32530872
Alignment:
| Q |
143 |
tggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacatgatgtatcaactagggtgttatgca |
242 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| || ||||||||||| || || |||| ||| ||| | |||||||||||||| ||| |||| ||| |
|
|
| T |
32531019 |
tggtgtagacatgccgggtgccgattaccaactcactaaactcttaggcctaaaaccatctgtcaaacgtctcatgatgtatcaacaaggttgtttcgca |
32530920 |
T |
|
| Q |
243 |
ggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaa |
290 |
Q |
| |
|
|| || ||||| || || || ||||| || | ||||||||||||||| |
|
|
| T |
32530919 |
ggcggcacagttctccgcttagcgaaagatcttgctgagaataacaaa |
32530872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 44128560 - 44128852
Alignment:
| Q |
18 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
117 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| |||| |
|
|
| T |
44128560 |
gatgctaggcaagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagatta |
44128659 |
T |
|
| Q |
118 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| || || || |||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
44128660 |
ctcacttgatcgtttgcaccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatat |
44128759 |
T |
|
| Q |
218 |
gatgtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
310 |
Q |
| |
|
|||||| |||| ||| || | |||||| || || || ||||||||||| || || |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
44128760 |
gatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgt |
44128852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 44132765 - 44133057
Alignment:
| Q |
18 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
117 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| |||| |
|
|
| T |
44132765 |
gatgctaggcaagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagatta |
44132864 |
T |
|
| Q |
118 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| || || || |||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
44132865 |
ctcacttgatcgtttgcaccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatat |
44132964 |
T |
|
| Q |
218 |
gatgtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
310 |
Q |
| |
|
|||||| |||| ||| || | |||||| || || || ||||||||||| || || |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
44132965 |
gatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgt |
44133057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 44141187 - 44141479
Alignment:
| Q |
18 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
117 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| |||| |
|
|
| T |
44141187 |
gatgctaggcaagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagatta |
44141286 |
T |
|
| Q |
118 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| || || || |||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
44141287 |
ctcacttgatcgtttgcaccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatat |
44141386 |
T |
|
| Q |
218 |
gatgtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
310 |
Q |
| |
|
|||||| |||| ||| || | |||||| || || || ||||||||||| || || |||||||| || |||||||||||||||||||||||||| |
|
|
| T |
44141387 |
gatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgt |
44141479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 22 - 310
Target Start/End: Complemental strand, 24163922 - 24163634
Alignment:
| Q |
22 |
ctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatattacaca |
121 |
Q |
| |
|
|||||||||||||| ||| |||||| ||| |||||||| |||||||| || ||||||||||| |||||||||| ||||| |||||||| || ||||| |
|
|
| T |
24163922 |
ctaggcaagacatggtggtagtagaggcaccaagactaggaaaggaggcagccgtgaaggctataaaagaatggggccaaccaaagtcaaagatcacaca |
24163823 |
T |
|
| Q |
122 |
tttaattttttgcacctata-gtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacatgat |
220 |
Q |
| |
|
||||| |||||||| |||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||| ||||| ||| |||||||| ||||| |
|
|
| T |
24163822 |
cttaatattttgcac-tataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtcttcgcccatgtgtaaaaaggtatatgat |
24163724 |
T |
|
| Q |
221 |
gtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgt |
310 |
Q |
| |
|
||| |||| |||||||| ||||||||| || |||||||| ||||| |||||||| |||||||| ||||||||| |||||||||||||||| |
|
|
| T |
24163723 |
gtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaaggttctcgtgtgttggttgt |
24163634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 57 - 307
Target Start/End: Complemental strand, 37863487 - 37863237
Alignment:
| Q |
57 |
ctagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatattacacatttaattttttgcacctatagtggtgtagacatgc |
156 |
Q |
| |
|
||||| || ||||||||| ||||||||| | |||||||||||||| |||||||| ||||| ||| |||||||||||||| |||||||| || |||| |
|
|
| T |
37863487 |
ctaggaaaagaggctgcaacaaaggctatcaaggaatggggtcaacctaagtcaaagattactcatctaattttttgcaccacaagtggtgtggatatgc |
37863388 |
T |
|
| Q |
157 |
ctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacatgatgtatcaactagggtgttatgcaggtggaacagtact |
256 |
Q |
| |
|
||||||| || || || || ||||| ||||| |||||| ||| |||||||| | || ||||||||||||| ||| |||| ||| ||||| || || || |
|
|
| T |
37863387 |
ctggtgctgactatcagctcacaaagctcttgggtcttcgcccgtatgtgaagcgttatatgatgtatcaacaaggttgttttgctggtgggacggtgct |
37863288 |
T |
|
| Q |
257 |
tcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggt |
307 |
Q |
| |
|
||||||||| || || || ||||| || |||||||| |||||||| ||||| |
|
|
| T |
37863287 |
tcgtttggctaaagatttggctgaaaacaacaaaggcgctcgtgttttggt |
37863237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 37859500 - 37859211
Alignment:
| Q |
18 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
117 |
Q |
| |
|
||||| || ||||||||| ||| || ||| |||| |||||||| || ||||| ||| ||||| ||| | |||||||||||||| ||||| || |||| |
|
|
| T |
37859500 |
gatgcaagacaagacatggtggttgtggaggtaccaagactaggaaaagaggcagcaacaaaggccatcaaggaatggggtcaacctaagtccaagatta |
37859401 |
T |
|
| Q |
118 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| || | || ||||||||| ||||| || |||||||| ||||| || || || || ||||| ||||| || ||| ||||||||||| | ||||| |
|
|
| T |
37859400 |
cccacctcatcttttgcaccaccagtggcgtggacatgcccggtgccgactatcagctgacaaagctcttgggccttcgtccatatgtgaagcgttacat |
37859301 |
T |
|
| Q |
218 |
gatgtatcaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggt |
307 |
Q |
| |
|
|||||| |||| ||| |||| ||| ||||| || || ||||||||||| || ||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
37859300 |
gatgtaccaacaaggttgttttgctggtggcacggtgcttcgtttggctaaagacttggctgaaaacaacaaaggtgctcgtgtgttggt |
37859211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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