View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16804_low_21 (Length: 282)
Name: NF16804_low_21
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16804_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 31499312 - 31499564
Alignment:
| Q |
14 |
tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcggt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31499312 |
tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcagt |
31499411 |
T |
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| Q |
114 |
tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31499412 |
tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtt |
31499511 |
T |
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| Q |
214 |
tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagat |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31499512 |
tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagat |
31499564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 31472743 - 31472995
Alignment:
| Q |
14 |
tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcggt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31472743 |
tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcagt |
31472842 |
T |
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| Q |
114 |
tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtt |
213 |
Q |
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| T |
31472843 |
tataatataaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtt |
31472942 |
T |
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| Q |
214 |
tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagat |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31472943 |
tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagat |
31472995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 31493926 - 31494178
Alignment:
| Q |
14 |
tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcggt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31493926 |
tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcagt |
31494025 |
T |
|
| Q |
114 |
tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31494026 |
tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttattatcagtt |
31494125 |
T |
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| Q |
214 |
tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagat |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31494126 |
tcttagattgtttaattctaatctattggtgattaaacctttaaccttgagat |
31494178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 31513836 - 31514089
Alignment:
| Q |
14 |
tcatattgtcgaattgtatattttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcggt |
113 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31513836 |
tcatattgtcgaattgtatattttaaaactttattgaacaaaaagatacgagtgtgttgtttgtaatttttgctactacgaaaattgaataaaagtcagt |
31513935 |
T |
|
| Q |
114 |
tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttact-atcagt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| | |
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| T |
31513936 |
tataatctaaatgtgttagcatgagtacggcttggttacaaactttacactattaatctcgtcctataaatttaattcattattcatgttactaatcaat |
31514035 |
T |
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| Q |
213 |
ttcttagattgtttaattctaatctattggtgattaaacctttaaccttgagat |
266 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| |
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| T |
31514036 |
ttcttagattgtttaattcgaatctattagtgattaaacctttatccttgagat |
31514089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 34 - 266
Target Start/End: Original strand, 35765228 - 35765462
Alignment:
| Q |
34 |
ttttaaaacttaattgaacaaaaagatacgagtgtgttgtttgtaatttttg-ctactacgaaaattgaataaaagtcggttataatctaaatgtgttag |
132 |
Q |
| |
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||||| |||||| ||||| |||||| ||||||| ||||||||||||||||| | || |||||| ||||||||||||| |||||| |||||| | || |
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| T |
35765228 |
ttttagaacttagttgaagaaaaaggtacgagtatgttgtttgtaatttttttcaacaacgaaacttgaataaaagtcaactataataaaaatgtttcag |
35765327 |
T |
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| Q |
133 |
c-atgagtacggcttggttacaaactttacactattaatctcatcctataaatttaattcattattcatgttactatcagtttcttagattgtttaattc |
231 |
Q |
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||||||| | ||||||||| |||||| |||||||||||| || |||||| | |||||||| |||||||| |||| ||||| |||||||| |||||| |
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| T |
35765328 |
ggatgagtatgacttggttactaactttgcactattaatctgattctataagctgaattcattcttcatgttgctattagttttctagattgtgtaattc |
35765427 |
T |
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| Q |
232 |
taatctattggtgattaaacctttaaccttgagat |
266 |
Q |
| |
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|| ||| | | || |||||||||||||||||||| |
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|
| T |
35765428 |
tagtctctcagcgactaaacctttaaccttgagat |
35765462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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