View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16804_low_22 (Length: 280)

Name: NF16804_low_22
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16804_low_22
NF16804_low_22
[»] chr7 (14 HSPs)
chr7 (16-255)||(24486578-24486817)
chr7 (38-179)||(3889991-3890133)
chr7 (13-179)||(3902008-3902175)
chr7 (12-179)||(3889515-3889683)
chr7 (105-183)||(46963238-46963316)
chr7 (86-183)||(21814267-21814364)
chr7 (39-183)||(44338841-44338987)
chr7 (38-183)||(17921373-17921519)
chr7 (18-183)||(15614424-15614591)
chr7 (119-183)||(26403375-26403439)
chr7 (198-255)||(35934747-35934804)
chr7 (203-255)||(25454679-25454731)
chr7 (12-98)||(3901750-3901836)
chr7 (38-183)||(11828089-11828240)
[»] chr1 (8 HSPs)
chr1 (32-187)||(11993414-11993569)
chr1 (105-183)||(10354219-10354297)
chr1 (42-183)||(2071704-2071848)
chr1 (42-183)||(2075234-2075378)
chr1 (105-183)||(3774490-3774568)
chr1 (203-255)||(26623902-26623954)
chr1 (203-255)||(49120165-49120217)
chr1 (105-159)||(15629549-15629603)
[»] chr5 (6 HSPs)
chr5 (39-183)||(24137388-24137534)
chr5 (54-183)||(9512268-9512395)
chr5 (106-183)||(27315112-27315189)
chr5 (105-160)||(11320618-11320673)
chr5 (107-143)||(16404789-16404825)
chr5 (105-157)||(18720617-18720669)
[»] chr6 (9 HSPs)
chr6 (86-183)||(33424154-33424252)
chr6 (42-182)||(28063174-28063316)
chr6 (38-183)||(13098033-13098179)
chr6 (105-187)||(18984357-18984439)
chr6 (105-172)||(2131735-2131802)
chr6 (105-183)||(21862424-21862502)
chr6 (105-187)||(9290809-9290892)
chr6 (120-183)||(13109445-13109508)
chr6 (204-239)||(17038570-17038605)
[»] chr4 (3 HSPs)
chr4 (54-183)||(54148082-54148212)
chr4 (55-183)||(24225860-24225989)
chr4 (105-183)||(16871510-16871588)
[»] scaffold0499 (1 HSPs)
scaffold0499 (38-183)||(7029-7175)
[»] chr2 (7 HSPs)
chr2 (105-183)||(8986786-8986864)
chr2 (39-183)||(38583664-38583810)
chr2 (19-175)||(42633118-42633275)
chr2 (105-183)||(32291013-32291091)
chr2 (38-183)||(20593582-20593726)
chr2 (203-255)||(21711992-21712044)
chr2 (151-183)||(29409245-29409277)
[»] chr3 (5 HSPs)
chr3 (86-183)||(16462807-16462904)
chr3 (105-183)||(22821033-22821111)
chr3 (105-170)||(34338084-34338149)
chr3 (120-183)||(42531164-42531227)
chr3 (106-183)||(29555925-29556001)
[»] chr8 (6 HSPs)
chr8 (39-183)||(20242518-20242664)
chr8 (39-183)||(20250496-20250642)
chr8 (105-183)||(5616788-5616866)
chr8 (203-255)||(9785572-9785624)
chr8 (86-183)||(16578956-16579054)
chr8 (86-183)||(16583696-16583794)
[»] scaffold0007 (1 HSPs)
scaffold0007 (106-183)||(14427-14504)
[»] scaffold0025 (1 HSPs)
scaffold0025 (127-183)||(153483-153539)
[»] scaffold0048 (1 HSPs)
scaffold0048 (108-183)||(62006-62081)
[»] scaffold0018 (1 HSPs)
scaffold0018 (107-160)||(31961-32014)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 24486817 - 24486578
Alignment:
Q  16 attcttgttgcttccactacgttgataactcactttggttgctgctattcattggttatgctataacttcatttggtttattttcggagtaatttgtaac 115  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24486817 attcttgttgcttccactacgttgatgactcactctggttgctgctattcattggttatgctataacttcatttggtttatttttggagtaatttgtaac 24486718  T
Q  116 aaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgttttcgtaacttgaagaatatcatgatgatggtgat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24486717 aaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgttttcgtaacttgaagaatatcatgatgatggtgat 24486618  T
Q  216 ctcttgtctgatcctttattatatcaacaagttgtgggta 255  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24486617 ctcttgtctgatcctttattatatcaacaagttgtgggta 24486578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 179
Target Start/End: Original strand, 3889991 - 3890133
Alignment:
Q  38 tgataactcactttggttgctgctattcattggttatgctataacttcatttggtttattttcggagtaatttgtaacaaacttaaagcttagtaagctt 137  Q
    |||||| |||||||||||| |||| |||||| ||| || ||| | || ||||||||||||||  |  |||||||||||||  ||||||||||||||||||    
T  3889991 tgataattcactttggttgttgctcttcattagttttgatatcatttgatttggtttattttttggttaatttgtaacaagtttaaagcttagtaagctt 3890090  T
Q  138 taacttcaagggtag-tgttagaagtttatattatttagtatg 179  Q
    || ||| ||| |||| |||||||| ||||||||||||| ||||    
T  3890091 tagcttaaagtgtagttgttagaactttatattatttaatatg 3890133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 3902008 - 3902175
Alignment:
Q  13 attattcttgttgcttccactacgttgataactcactttggttgctgctattcattggttatgctataacttcatttggtttatttt--cggagtaattt 110  Q
    |||||||||||||||  | || |  |||||| ||||||||||||||||| |||||||||| || ||| |  | || |||||||||||  |||  ||||||    
T  3902008 attattcttgttgctctctctcctatgataattcactttggttgctgctcttcattggttttgatatcagctgatctggtttattttttcggt-taattt 3902106  T
Q  111 gtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatg 179  Q
    |||||||  ||||||||||| |||||||| ||| ||||| |||||||||| ||||||||||||| ||||    
T  3902107 gtaacaagtttaaagcttagcaagctttagcttaaagggaagtgttagaactttatattatttaatatg 3902175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 3889515 - 3889683
Alignment:
Q  12 gattattcttgttgcttccactacgttgataactcactttggttgctgctattcattggttatgctataacttcatttggtttattttcggagt-aattt 110  Q
    ||||||||||||||||  | |||   |||||| ||||||||||||||||| |||||||||| || |||   || ||||||||||||||  | || |||||    
T  3889515 gattattcttgttgctctctctattatgataattcactttggttgctgctcttcattggttttgatatcggttgatttggtttattttttgggttaattt 3889614  T
Q  111 gtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatg 179  Q
    |||| ||  ||||||||||| || ||||| ||| ||||| |||||||||| ||||||||||||| ||||    
T  3889615 gtaataagtttaaagcttagcaaactttagcttaaagggaagtgttagaactttatattatttaatatg 3889683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 46963316 - 46963238
Alignment:
Q  105 taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    |||||||||||||  |||||||||||||||||| | ||| | |||||||||||||| ||||||||||||||||||||||    
T  46963316 taatttgtaacaagtttaaagcttagtaagcttcagcttgaggggtagtgttagaactttatattatttagtatgtttt 46963238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 21814267 - 21814364
Alignment:
Q  86 atttggtttattttcggagtaatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    ||||||| |||||||||  |||| |||||||||| |||||||| |||||  | ||||| | |||||||||||||| ||||||||||||||||||||||    
T  21814267 atttggtatattttcgggataatatgtaacaaacataaagcttggtaagactcaacttgaggggtagtgttagaactttatattatttagtatgtttt 21814364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 183
Target Start/End: Original strand, 44338841 - 44338987
Alignment:
Q  39 gataactcactttggttgctgctattcattggttatgctataacttcatttggtttatttt--cggagtaatttgtaacaaacttaaagcttagtaagct 136  Q
    ||||||||||||||||||||||| |||||||||| |||||  |  | ||||||||||||||    || |||||||||| |  |||||||||||||||||     
T  44338841 gataactcactttggttgctgctcttcattggttctgctaacagctgatttggtttatttttctagattaatttgtaataggcttaaagcttagtaagcc 44338940  T
Q  137 ttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    | ||||| | |||| ||||| ||| ||||||||| ||||||| ||||    
T  44338941 tcaacttgaggggtggtgtttgaactttatattacttagtatatttt 44338987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 17921519 - 17921373
Alignment:
Q  38 tgataactcactttggttgctgctattcattggttatgctataacttcatttggtttattttcggagt-aatttgtaacaaacttaaagcttagtaagct 136  Q
    ||||||||||||| |||||||||| |   |||||| || ||| |  | ||||| ||||||||| | || |||||||||||| ||||||||||||||||||    
T  17921519 tgataactcacttcggttgctgctctctgttggttctgttatcagctaatttgttttattttctgggttaatttgtaacaagcttaaagcttagtaagct 17921420  T
Q  137 ttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    ||| ||| | ||||| ||||  || |||| |||||||||||||||||    
T  17921419 ttagcttgaggggtactgttcaaattttaaattatttagtatgtttt 17921373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 15614591 - 15614424
Alignment:
Q  18 tcttgttgcttccactacgttgataactcactttggttgctgctattcattggttatgctataacttcatttggtttattttc--ggagtaatttgtaac 115  Q
    ||||||||||  | |||||  |||||||||||||||||| |||| | |||||||| |||||  |    ||||||||||||||   ||  |||||| ||||    
T  15614591 tcttgttgctctctctacgaagataactcactttggttgatgctctccattggttttgctaacaacagatttggtttatttttctgggttaatttttaac 15614492  T
Q  116 aaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    || |||||| |||||||||||| | ||  | ||||||||| |||| ||||||||||||||||||||||    
T  15614491 aagcttaaaacttagtaagcttcagctcgaggggtagtgtaagaactttatattatttagtatgtttt 15614424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 26403375 - 26403439
Alignment:
Q  119 cttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    ||||||||||||||| ||||| ||| | |||||||||||||| ||||||||||||||||||||||    
T  26403375 cttaaagcttagtaaactttagcttgaggggtagtgttagaactttatattatttagtatgtttt 26403439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 35934804 - 35934747
Alignment:
Q  198 tatcatgatgatggtgatctcttgtctgatcctttattatatcaacaagttgtgggta 255  Q
    |||| ||||||||||||||||||| ||||||||||||| |||| |||| |||||||||    
T  35934804 tatcgtgatgatggtgatctcttgcctgatcctttattgtatcgacaacttgtgggta 35934747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 25454731 - 25454679
Alignment:
Q  203 tgatgatggtgatctcttgtctgatcctttattatatcaacaagttgtgggta 255  Q
    ||||||||||||||||||| ||||||||||||| |||| |||| |||||||||    
T  25454731 tgatgatggtgatctcttgcctgatcctttattgtatcgacaacttgtgggta 25454679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 3901750 - 3901836
Alignment:
Q  12 gattattcttgttgcttccactacgttgataactcactttggttgctgctattcattggttatgctataacttcatttggtttattt 98  Q
    ||||||||||||||||  | |||   |||||| |||||||||||| |||| |||||||||| || ||| || | |||||||||||||    
T  3901750 gattattcttgttgctctctctattatgataattcactttggttgatgctcttcattggttttgatatcacctgatttggtttattt 3901836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 11828240 - 11828089
Alignment:
Q  38 tgataactcactttggttgctgctattcattggttatgctataacttcatttggtttattttcggag--taatttgtaacaaacttaaagcttagtaagc 135  Q
    ||||||||||||||  |||||||| | ||||||||  ||||| |  | |||| |||||||||   ||  ||||||||||||| ||||| ||||||||| |    
T  11828240 tgataactcactttccttgctgctctccattggttccgctatcaaatgatttagtttatttttctaggttaatttgtaacaagcttaaggcttagtaatc 11828141  T
Q  136 tttaacttcaagggta--gtgttagaagtttatat--tatttagtatgtttt 183  Q
    || ||||| | |||||  ||||||||| || ||||  |||||||||||||||    
T  11828140 ttcaacttgaggggtaatgtgttagaacttcatattatatttagtatgtttt 11828089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 11993414 - 11993569
Alignment:
Q  32 ctacgttgataactcactttggttgctgctattcattggttatgctataacttcatttggtttattttcggagtaatttgtaacaaacttaaagcttagt 131  Q
    ||||| ||||||||||||||||||| |||| ||||||||||||||||| |  | |||||||||||||||   || | || |||||| |||||| |||| |    
T  11993414 ctacgatgataactcactttggttgatgctcttcattggttatgctatcagctgatttggtttattttctttgttaattttaacaagcttaaatcttaat 11993513  T
Q  132 aagctttaacttcaagggtagtgttagaagtttatattatttagtatgttttcgta 187  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  11993514 aagctttaacttgaggggtagtgttagaagtttatattatttagtatgttttcgta 11993569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 10354219 - 10354297
Alignment:
Q  105 taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    |||||| |||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||||||||||||||    
T  10354219 taatttctaacaaacttaaagcttagtaagctttagcttgaagagtagtgttagaactttatattatttagtatgtttt 10354297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 183
Target Start/End: Complemental strand, 2071848 - 2071704
Alignment:
Q  42 aactcactttggttgctgctattcattggttatgctataacttcatttggtttattttc--ggagtaatttgtaacaaacttaaa-gcttagtaagcttt 138  Q
    ||||||||||||||| |||| | |||| |||||||||| |  | |||| |||||||||   ||  ||||||||||||| |||||| ||||||||||||||    
T  2071848 aactcactttggttgttgctctccatttgttatgctatcaactgatttagtttatttttatggtttaatttgtaacaagcttaaacgcttagtaagcttt 2071749  T
Q  139 aacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    | ||| | ||||||||||| |||||||||||||||||||||||||    
T  2071748 agcttgaggggtagtgttacaagtttatattatttagtatgtttt 2071704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 42 - 183
Target Start/End: Complemental strand, 2075378 - 2075234
Alignment:
Q  42 aactcactttggttgctgctattcattggttatgctataacttcatttggtttattttc--ggagtaatttgtaacaaacttaaa-gcttagtaagcttt 138  Q
    ||||||||||||||| |||| |  ||| |||||||||| |  | |||| |||||||||   ||  ||||||||||||| |||||| ||||||||||||||    
T  2075378 aactcactttggttgttgctctctatttgttatgctatcaactgatttagtttatttttatggtttaatttgtaacaagcttaaacgcttagtaagcttt 2075279  T
Q  139 aacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    | ||| | ||||||||||| |||||||||||||||||||||||||    
T  2075278 agcttgaggggtagtgttacaagtttatattatttagtatgtttt 2075234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 3774568 - 3774490
Alignment:
Q  105 taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    ||||||||||||| | ||||||||||||||||||||||| | ||||| ||||||||||||||||| |||| ||||||||    
T  3774568 taatttgtaacaagcataaagcttagtaagctttaacttgaggggtaatgttagaagtttatattttttaatatgtttt 3774490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 26623954 - 26623902
Alignment:
Q  203 tgatgatggtgatctcttgtctgatcctttattatatcaacaagttgtgggta 255  Q
    ||||||||||||||||||| ||||||||||||| |||| |||| |||||||||    
T  26623954 tgatgatggtgatctcttgcctgatcctttattgtatcgacaacttgtgggta 26623902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 49120165 - 49120217
Alignment:
Q  203 tgatgatggtgatctcttgtctgatcctttattatatcaacaagttgtgggta 255  Q
    ||||||||||||||||||| ||||||||||||| |||| |||| |||||||||    
T  49120165 tgatgatggtgatctcttgcctgatcctttattgtatcgacaacttgtgggta 49120217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 15629603 - 15629549
Alignment:
Q  105 taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttaga 159  Q
    ||||||||||||| ||||||||||||||||||| | ||| | |||||||||||||    
T  15629603 taatttgtaacaagcttaaagcttagtaagcttcagcttgaggggtagtgttaga 15629549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 39 - 183
Target Start/End: Original strand, 24137388 - 24137534
Alignment:
Q  39 gataactcactttggttgctgctattcattggttatgctataacttcatttggtttattttc--ggagtaatttgtaacaaacttaaagcttagtaagct 136  Q
    ||||||||| ||||||||||||| |||||||||| |||||  |  | ||||||||||||||   ||  ||||||||||||| ||||||||||||||||||    
T  24137388 gataactcattttggttgctgctcttcattggttctgctagcagctgatttggtttatttttctgggttaatttgtaacaagcttaaagcttagtaagct 24137487  T
Q  137 ttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    ||| ||| | |||||||||||||| ||||||||||||||||||||||    
T  24137488 ttagcttgaggggtagtgttagaactttatattatttagtatgtttt 24137534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 9512268 - 9512395
Alignment:
Q  54 ttgctgctattcattggttatgctataacttcatttggtttattttcggag-taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtag 152  Q
    |||||||| ||||||||||||||||  |  | ||||||||||||||||| | ||||||||||||| |||||   | | ||||| | | ||| | |||| |    
T  9512268 ttgctgctcttcattggttatgctacgagctaatttggtttattttcggggttaatttgtaacaagcttaa---taattaagcatcagcttgatgggttg 9512364  T
Q  153 tgttagaagtttatattatttagtatgtttt 183  Q
    |||||||| ||||||||||||||||||||||    
T  9512365 tgttagaactttatattatttagtatgtttt 9512395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 27315112 - 27315189
Alignment:
Q  106 aatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    |||||||||||| |||||| |||||||||||||| ||| | ||||||||||| || || |||||||||| ||| ||||    
T  27315112 aatttgtaacaagcttaaaacttagtaagctttaccttgaggggtagtgttaaaacttcatattatttaatatatttt 27315189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 11320673 - 11320618
Alignment:
Q  105 taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaa 160  Q
    ||||||||||||| ||||||||||||||||||| | ||| | ||||||||||||||    
T  11320673 taatttgtaacaagcttaaagcttagtaagcttcagcttgatgggtagtgttagaa 11320618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 16404825 - 16404789
Alignment:
Q  107 atttgtaacaaacttaaagcttagtaagctttaactt 143  Q
    |||| |||||| |||||||||||||||||||||||||    
T  16404825 atttctaacaagcttaaagcttagtaagctttaactt 16404789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 18720669 - 18720617
Alignment:
Q  105 taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgtta 157  Q
    |||||| | ||||| |||||||||||||||||||||||| | ||||| |||||    
T  18720669 taatttttgacaaatttaaagcttagtaagctttaactttaggggtaatgtta 18720617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 33424252 - 33424154
Alignment:
Q  86 atttggtttattttc-ggagtaatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| | |||||||||||||| ||||||||||||||||||||||    
T  33424252 atttggtttattttctggattaatttgtaacaaacttaaagcttagtaagcttcaacttgaggggtagtgttagaactttatattatttagtatgtttt 33424154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 182
Target Start/End: Complemental strand, 28063316 - 28063174
Alignment:
Q  42 aactcactttggttgctgctattcattggttatgctataacttcatttggtttattttc--ggagtaatttgtaacaaacttaaagcttagtaagcttta 139  Q
    |||||||||||||||||||| |  |||||||||||||| |  | ||||||||||||||   ||  ||||||||||||| ||||||||||||||| ||| |    
T  28063316 aactcactttggttgctgctctctattggttatgctatcagctgatttggtttatttttctgggttaatttgtaacaagcttaaagcttagtaaacttca 28063217  T
Q  140 acttcaagggtagtgttagaagtttatattatttagtatgttt 182  Q
     ||| | ||| |||||||||| |||||||||||||||||||||    
T  28063216 tcttgaggggaagtgttagaactttatattatttagtatgttt 28063174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 183
Target Start/End: Original strand, 13098033 - 13098179
Alignment:
Q  38 tgataactcactttggttgctgctattcattggttatgctataacttcatttggtttattttcggagt-aatttgtaacaaacttaaagcttagtaagct 136  Q
    |||||||||||||||| || |||| ||||||| |||||| || |  | ||||||||||||||| | || |||||||||| | |||||| ||||||||||     
T  13098033 tgataactcactttgggtgttgctcttcattgattatgccatgagctgatttggtttattttcagggttaatttgtaacgagcttaaaccttagtaagcc 13098132  T
Q  137 ttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    ||| ||| | |||||||||||||||||||||   |||||||||||||    
T  13098133 ttagcttaaggggtagtgttagaagtttatacattttagtatgtttt 13098179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 18984357 - 18984439
Alignment:
Q  105 taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgttttcgta 187  Q
    ||||||||||||| |||||| |||||||||||||| ||| | |||| ||||||||| ||||||||| ||||||| ||||||||    
T  18984357 taatttgtaacaagcttaaaccttagtaagctttagcttgaggggtggtgttagaattttatattacttagtattttttcgta 18984439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 2131802 - 2131735
Alignment:
Q  105 taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatt 172  Q
    ||||||||||||| ||||||||||||||||||| ||||| ||||||| | |||| |||||||||||||    
T  2131802 taatttgtaacaagcttaaagcttagtaagcttcaacttgaagggtaatattaggagtttatattatt 2131735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 21862424 - 21862502
Alignment:
Q  105 taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    ||||||||||||| ||||||| |||||| |||| | ||| | ||| |||||||||| ||||||||||||||||||||||    
T  21862424 taatttgtaacaagcttaaagtttagtatgcttcagcttgaggggaagtgttagaactttatattatttagtatgtttt 21862502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 9290892 - 9290809
Alignment:
Q  105 taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatg-ttttcgta 187  Q
    ||||||||||||| |||||||||| |||| ||| | ||||| | ||| |||||||| |||||||||||||||||| ||||||||    
T  9290892 taatttgtaacaagcttaaagcttggtaaacttcagcttcaggagtaatgttagaactttatattatttagtatgcttttcgta 9290809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 13109445 - 13109508
Alignment:
Q  120 ttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    ||||| |||||||||||||| ||| | |||| || |||||| ||||||||||||||||||||||    
T  13109445 ttaaaacttagtaagctttagcttaatgggttgtattagaaatttatattatttagtatgtttt 13109508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 239
Target Start/End: Complemental strand, 17038605 - 17038570
Alignment:
Q  204 gatgatggtgatctcttgtctgatcctttattatat 239  Q
    |||||||| |||||||||||||||||||||||||||    
T  17038605 gatgatggagatctcttgtctgatcctttattatat 17038570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 54148082 - 54148212
Alignment:
Q  54 ttgctgctattcattggttatgctataacttcatttggtttattttcggagt-aatttgtaacaaacttaaagcttagtaagctttaacttcaagggtag 152  Q
    |||||||| |||||| ||||| ||| ||  | |||||||||||||| || || |||||||||||| ||||||||||||||||||| | ||| | ||||||    
T  54148082 ttgctgctcttcattcgttatactacaagctaatttggtttatttttggggttaatttgtaacaagcttaaagcttagtaagcttcagcttgaggggtag 54148181  T
Q  153 tgttagaagtttatattatttagtatgtttt 183  Q
    ||||| |||||||||||||||| ||||||||    
T  54148182 tgttaaaagtttatattatttactatgtttt 54148212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 55 - 183
Target Start/End: Original strand, 24225860 - 24225989
Alignment:
Q  55 tgctgctattcattggttatgctataacttcatttggtttattttcggagt-aatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagt 153  Q
    ||||||| ||||||| ||||| ||| |  | ||||||||||||||||  || |||||||||  | ||| || |||||||||||||||||||| |||||||    
T  24225860 tgctgctcttcattgattatgttatcagctgatttggtttattttcgaggttaatttgtaatgagcttcaaacttagtaagctttaacttcaggggtagt 24225959  T
Q  154 gttagaagtttatattatttagtatgtttt 183  Q
    ||| ||||||||||||||||||||| ||||    
T  24225960 gttcgaagtttatattatttagtatatttt 24225989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 16871510 - 16871588
Alignment:
Q  105 taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    |||||||||||||  |||||||||||||||||| | ||| | |||||||||||||| ||||||||||||||||||||||    
T  16871510 taatttgtaacaagtttaaagcttagtaagcttcagcttgaggggtagtgttagaactttatattatttagtatgtttt 16871588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 7175 - 7029
Alignment:
Q  38 tgataactcactttggttgctgctattcattggttatgctataacttcatttggtttattttcggagt-aatttgtaacaaacttaaagcttagtaagct 136  Q
    |||||||||||||||| || |||| | ||||| |||||| || |  | |||||||||||||||   || |||||||||| | |||||| |||||||||||    
T  7175 tgataactcactttgggtgttgctctccattgattatgccatgagctgatttggtttattttcaaggttaatttgtaacgagcttaaaccttagtaagct 7076  T
Q  137 ttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    ||| ||| | ||||||||||||||||||||| | |||||||||||||    
T  7075 ttagcttaaggggtagtgttagaagtttatactttttagtatgtttt 7029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 8986786 - 8986864
Alignment:
Q  105 taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    ||||||||||||| ||||||||||||||||||| | ||| | |||||||||||||| ||||||||||||||||||||||    
T  8986786 taatttgtaacaagcttaaagcttagtaagcttcagcttgaggggtagtgttagaactttatattatttagtatgtttt 8986864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 183
Target Start/End: Complemental strand, 38583810 - 38583664
Alignment:
Q  39 gataactcactttggttgctgctattcattggttatgctataacttcatttggttta---ttttcggagtaatttgtaacaaacttaaagcttagtaagc 135  Q
    ||||||||||||||||||||||| || ||||||| | |||  |  | ||||||||||   |||| ||| ||||||||||| || ||||||||||||||||    
T  38583810 gataactcactttggttgctgctcttaattggttcttctaccagctgatttggtttattttttttggattaatttgtaac-aagttaaagcttagtaagc 38583712  T
Q  136 tttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    || | ||| | |||||||||||||| ||||||||| ||||||||||||    
T  38583711 ttcagcttgaggggtagtgttagaactttatattacttagtatgtttt 38583664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 42633275 - 42633118
Alignment:
Q  19 cttgttgcttccactacgttgataactcactttggttgctgctattcattggttatgctataacttcatttggtttattttcggagt-aatttgtaacaa 117  Q
    |||| ||||||| |||  || ||||||||||||||||| || | |||||| || ||||||| |  | |||| |||||||||| | || ||||| ||| ||    
T  42633275 cttgctgcttcctctatcttaataactcactttggttgttgttcttcattagtcatgctattagctgatttagtttattttcagggttaatttataataa 42633176  T
Q  118 acttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttag 175  Q
    ||| |||| ||||||||||||||||| | | ||||||||| |||||||||||||||||    
T  42633175 actaaaagtttagtaagctttaacttgaggtgtagtgttaaaagtttatattatttag 42633118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 32291013 - 32291091
Alignment:
Q  105 taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    ||||| ||||||| ||||||||||||||||||| | ||| | |||||||||||||  ||||||||||||||||||||||    
T  32291013 taattggtaacaagcttaaagcttagtaagcttcagcttgaggggtagtgttagatctttatattatttagtatgtttt 32291091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 20593726 - 20593582
Alignment:
Q  38 tgataactcactttggttgctgctattcattggttatgctataacttcatttggttta-ttttcggagtaatttgtaacaaacttaaagcttagtaagct 136  Q
    |||||||||||||||||||||||| ||| ||| || | |||| |  | |||||||||| |||| ||| ||||||||||||| |||||| |||||||| ||    
T  20593726 tgataactcactttggttgctgctcttcgttgattctactatcagctgatttggtttattttttggattaatttgtaacaagcttaaa-cttagtaaact 20593628  T
Q  137 ttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    | ||||| | ||||||| |||||| || ||||||  |||||||||||    
T  20593627 tcaactttaggggtagt-ttagaacttcatattacgtagtatgtttt 20593582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 21711992 - 21712044
Alignment:
Q  203 tgatgatggtgatctcttgtctgatcctttattatatcaacaagttgtgggta 255  Q
    ||||||||||||| ||||| ||||||||||||| |||| |||| |||||||||    
T  21711992 tgatgatggtgatatcttgcctgatcctttattgtatcgacaacttgtgggta 21712044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 29409277 - 29409245
Alignment:
Q  151 agtgttagaagtttatattatttagtatgtttt 183  Q
    ||||||||||||||||||| |||||||||||||    
T  29409277 agtgttagaagtttatattgtttagtatgtttt 29409245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 16462807 - 16462904
Alignment:
Q  86 atttggtttattttcggagtaatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    ||||||| |||||||||  |||| |||||||||| |||||||| |||||  | ||||| | |||||||||||||| ||||||||||||||||||||||    
T  16462807 atttggtatattttcgggataatatgtaacaaacataaagcttggtaagactcaacttgaggggtagtgttagaactttatattatttagtatgtttt 16462904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 22821111 - 22821033
Alignment:
Q  105 taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    |||||||||||||  ||||||||||||| |||||| ||| | |||||||||||||| ||||||||||||| ||| ||||    
T  22821111 taatttgtaacaagtttaaagcttagtaggctttagctttaggggtagtgttagaactttatattatttaatatctttt 22821033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 34338084 - 34338149
Alignment:
Q  105 taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatatta 170  Q
    |||||||||||||  |||||||||||||||||||| ||| | ||||||  ||| ||||||||||||    
T  34338084 taatttgtaacaagtttaaagcttagtaagctttagcttgaggggtagctttaaaagtttatatta 34338149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 42531164 - 42531227
Alignment:
Q  120 ttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    |||||||||||||||||| |  || | || ||||||||||| |||||| |||||||||||||||    
T  42531164 ttaaagcttagtaagcttcagtttgagggttagtgttagaactttatactatttagtatgtttt 42531227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 29555925 - 29556001
Alignment:
Q  106 aatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    ||||||||| || |||||||| |  ||||||||  ||| |||| || ||||||||||||||||||| |||||||||||    
T  29555925 aatttgtaataagcttaaagcctcataagctttggcttgaagg-taatgttagaagtttatattatctagtatgtttt 29556001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 183
Target Start/End: Original strand, 20242518 - 20242664
Alignment:
Q  39 gataactcactttggttgctgctattcattggttatgctataacttcatttggtttatttt--cggagtaatttgtaacaaacttaaagcttagtaagct 136  Q
    ||||||||||||||||||||||| |||||||||| |||||  |  | ||||||||||||||    || |||||||||| |  |||||||||||||||||     
T  20242518 gataactcactttggttgctgctcttcattggttctgctaacagctgatttggtttatttttctagattaatttgtaataggcttaaagcttagtaagcc 20242617  T
Q  137 ttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    | ||||| | |||| ||||| ||| ||||||||| ||||||| ||||    
T  20242618 tcaacttgaggggtggtgtttgaactttatattacttagtatatttt 20242664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 183
Target Start/End: Complemental strand, 20250642 - 20250496
Alignment:
Q  39 gataactcactttggttgctgctattcattggttatgctataacttcatttggtttatttt--cggagtaatttgtaacaaacttaaagcttagtaagct 136  Q
    ||||||||||||||||||||||| |||||||||| |||||  |  | ||||||||||||||    || |||||||||| |  |||||||||||||||||     
T  20250642 gataactcactttggttgctgctcttcattggttctgctaacagctgatttggtttatttttctagattaatttgtaataggcttaaagcttagtaagcc 20250543  T
Q  137 ttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    | ||||| | |||| ||||| ||| ||||||||| ||||||| ||||    
T  20250542 tcaacttgaggggtggtgtttgaactttatattacttagtatatttt 20250496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 5616788 - 5616866
Alignment:
Q  105 taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    |||||||||||||  ||||||||||||| |||||| ||| | |||||||||||||| ||||||||||||| ||| ||||    
T  5616788 taatttgtaacaagtttaaagcttagtaggctttagctttaggggtagtgttagaactttatattatttaatatctttt 5616866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 9785624 - 9785572
Alignment:
Q  203 tgatgatggtgatctcttgtctgatcctttattatatcaacaagttgtgggta 255  Q
    ||||||||||||||||||| ||||||||||||| |||| |||| |||||||||    
T  9785624 tgatgatggtgatctcttgcctgatcctttattgtatcgacaacttgtgggta 9785572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 16579054 - 16578956
Alignment:
Q  86 atttggtttattttcggagtaatttgtaacaaacttaaagcttagtaagctttaacttcaaggg--tagtgttagaagtttatattatttagtatgtttt 183  Q
    ||||||||||||||  |  |||||||||||||  |||||||||| ||||||||||||| | |||  ||||||| ||| |||||||||||||| |||||||    
T  16579054 atttggtttatttttaggttaatttgtaacaagtttaaagcttattaagctttaacttgaggggtatagtgttggaa-tttatattatttaggatgtttt 16578956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 16583794 - 16583696
Alignment:
Q  86 atttggtttattttcggagtaatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgt-tagaagtttatattatttagtatgtttt 183  Q
    ||||||||||||||  |  ||||||||| |||| |||||||||||||||||||| ||| | |||||  || ||| | |||||||||||||| |||||||    
T  16583794 atttggtttattttaaggttaatttgtatcaaatttaaagcttagtaagctttagcttgaggggtatagtgtaggaatttatattatttaggatgtttt 16583696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 14504 - 14427
Alignment:
Q  106 aatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    |||||||||||| ||||||||||||||||||| | ||| |  ||| ||||||||| ||||||||| ||||||||||||    
T  14504 aatttgtaacaagcttaaagcttagtaagcttcagcttgagaggtggtgttagaattttatattaattagtatgtttt 14427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 153539 - 153483
Alignment:
Q  127 ttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    |||| |||||||| ||| | || | ||||||||||||||||||||||||||||||||    
T  153539 ttagcaagctttagcttaatggtttgtgttagaagtttatattatttagtatgtttt 153483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 62081 - 62006
Alignment:
Q  108 tttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtttatattatttagtatgtttt 183  Q
    ||||||||||||||||| ||| |||||||||| ||| | |||||| |||   ||||||||||||| ||||| ||||    
T  62081 tttgtaacaaacttaaaacttggtaagctttagcttgacgggtagggttctgagtttatattattgagtatttttt 62006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 31961 - 32014
Alignment:
Q  107 atttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaa 160  Q
    ||||||||||| ||||||||||||||||||||| | | | ||| ||||||||||    
T  31961 atttgtaacaagcttaaagcttagtaagctttagcctgagggggagtgttagaa 32014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University