View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16804_low_23 (Length: 277)
Name: NF16804_low_23
Description: NF16804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16804_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 30853124 - 30853367
Alignment:
| Q |
18 |
cattcaagtttgtggcttcaaaccattggttaaa-ttaaggtaatttcatctcaagaaatttatggcatgaatgttgcttgagtagaaacttaaatctct |
116 |
Q |
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| T |
30853124 |
cattcaagtttgtgacttcaaaccattggttaaaattaaggtaatttcatctcaagaaatttgtggcatgaatgttgcttgagtagaaacttaactctct |
30853223 |
T |
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| Q |
117 |
tccatgaaatgaaagaagttgagttggactttacgnnnnnnnaattttgagaaaagaccacccataaatttagaataatcttatg-tgacaacatgagtt |
215 |
Q |
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| T |
30853224 |
cccatgaaatgaaagaagttgagttggactatacgtttttttaattttgagaaaagaccgcccataaatttagaataatcttatgttgacaacatgagtt |
30853323 |
T |
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| Q |
216 |
tccatgactcgtcttttgtgagtgagtcaagaaaatacaatata |
259 |
Q |
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| T |
30853324 |
tccatgactcgtcttttgtgagtgagtcaagaaaatacaatata |
30853367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 15077187 - 15077128
Alignment:
| Q |
197 |
ttatgtgacaacatgagtttccatgactcgtcttttgtgagtgagtcaagaaaatacaat |
256 |
Q |
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| T |
15077187 |
ttatatgacaacatgagtttccataacttatcttttgtgagtgagtcaagaaaatgcaat |
15077128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 15077346 - 15077248
Alignment:
| Q |
52 |
ttaaggtaatttcatctcaagaaatttatggcatgaatgttgcttgagtagaaacttaaatctcttccatgaaatgaaagaagttgagttggactttacg |
151 |
Q |
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| T |
15077346 |
ttaaagtaatttcatctcagaaaatttgtgccctgaacattgcc-gagtagaaactcaaatctctcccaagaaatggaagaagttgaggaggactttacg |
15077248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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